Combining Models#

Basics#

While the Astropy modeling package makes it very easy to define new models either from existing functions, or by writing a Model subclass, an additional way to create new models is by combining them using arithmetic expressions. This works with models built into Astropy, and most user-defined models as well. For example, it is possible to create a superposition of two Gaussians like so:

>>> from astropy.modeling import models
>>> g1 = models.Gaussian1D(1, 0, 0.2)
>>> g2 = models.Gaussian1D(2.5, 0.5, 0.1)
>>> g1_plus_2 = g1 + g2

The resulting object g1_plus_2 is itself a new model.

Note

The model g1_plus_2 is a CompoundModel which contains the models g1 and g2 without any parameter duplication. Meaning changes to the parameters of g1_plus_2 will effect the parameters of g1 or g2 and vice versa; if one does not want this to occur one can copy the models prior to adding them using the .copy() method g1.copy() + g2.copy(). In general applies to any CompoundModel constructed using a binary operation, so that CompoundModel follows the Python convention for construction of container objects. For more information on this please see the API Changes in astropy.modeling

Evaluating, say, g1_plus_2(0.25) is the same as evaluating g1(0.25) + g2(0.25):

>>> g1_plus_2(0.25)  
0.5676756958301329
>>> g1_plus_2(0.25) == g1(0.25) + g2(0.25)
True

This model can be further combined with other models in new expressions.

These new compound models can also be fitted to data, like most other models (though this currently requires one of the non-linear fitters):

import warnings
import numpy as np
import matplotlib.pyplot as plt
from astropy.modeling import models, fitting

# Generate fake data
rng = np.random.default_rng(seed=42)
g1 = models.Gaussian1D(1, 0, 0.2)
g2 = models.Gaussian1D(2.5, 0.5, 0.1)
x = np.linspace(-1, 1, 200)
y = g1(x) + g2(x) + rng.normal(0., 0.2, x.shape)

# Now to fit the data create a new superposition with initial
# guesses for the parameters:
gg_init = models.Gaussian1D(1, 0, 0.1) + models.Gaussian1D(2, 0.5, 0.1)
fitter = fitting.SLSQPLSQFitter()

with warnings.catch_warnings():
    # Ignore a warning on clipping to bounds from the fitter
    warnings.filterwarnings('ignore', message='Values in x were outside bounds',
                            category=RuntimeWarning)
    gg_fit = fitter(gg_init, x, y)

# Plot the data with the best-fit model
plt.figure(figsize=(8,5))
plt.plot(x, y, 'ko')
plt.plot(x, gg_fit(x))
plt.xlabel('Position')
plt.ylabel('Flux')

(png, svg, pdf)

../../_images/compound-models-1.png

This works for 1-D models, 2-D models, and combinations thereof, though there are some complexities involved in correctly matching up the inputs and outputs of all models used to build a compound model. You can learn more details in the Combining Models documentation.

Astropy models also support convolution through the function convolve_models, which returns a compound model.

For instance, the convolution of two Gaussian functions is also a Gaussian function in which the resulting mean (variance) is the sum of the means (variances) of each Gaussian.

import numpy as np
import matplotlib.pyplot as plt
from astropy.modeling import models
from astropy.convolution import convolve_models

g1 = models.Gaussian1D(1, -1, 1)
g2 = models.Gaussian1D(1, 1, 1)
g3 = convolve_models(g1, g2)

x = np.linspace(-3, 3, 50)
plt.plot(x, g1(x), 'k-')
plt.plot(x, g2(x), 'k-')
plt.plot(x, g3(x), 'k-')

(png, svg, pdf)

../../_images/compound-models-2.png

A comprehensive description#

Some terminology#

It is possible to create new models just by combining existing models using the arithmetic operators +, -, *, /, and **, or by model composition using | and concatenation (explained below) with &, as well as using fix_inputs() for reducing the number of inputs to a model.

In discussing the compound model feature, it is useful to be clear about a few terms where there have been points of confusion:

  • The term “model” can refer either to a model class or a model instance.

    • All models in astropy.modeling, whether it represents some function, a rotation, etc., are represented in the abstract by a model class–specifically a subclass of Model–that encapsulates the routine for evaluating the model, a list of its required parameters, and other metadata about the model.

    • Per typical object-oriented parlance, a model instance is the object created when when calling a model class with some arguments–in most cases values for the model’s parameters.

    A model class, by itself, cannot be used to perform any computation because most models, at least, have one or more parameters that must be specified before the model can be evaluated on some input data. However, we can still get some information about a model class from its representation. For example:

    >>> from astropy.modeling.models import Gaussian1D
>>> Gaussian1D
<class 'astropy.modeling.functional_models.Gaussian1D'>
Name: Gaussian1D
N_inputs: 1
N_outputs: 1
Fittable parameters: ('amplitude', 'mean', 'stddev')

    We can then create a model instance by passing in values for the three parameters:

    >>> my_gaussian = Gaussian1D(amplitude=1.0, mean=0, stddev=0.2)
>>> my_gaussian  
<Gaussian1D(amplitude=1.0, mean=0.0, stddev=0.2)>

    We now have an instance of Gaussian1D with all its parameters (and in principle other details like fit constraints) filled in so that we can perform calculations with it as though it were a function:

    >>> my_gaussian(0.2)  
0.6065306597126334

    In many cases this document just refers to “models”, where the class/instance distinction is either irrelevant or clear from context. But a distinction will be made where necessary.

  • A compound model can be created by combining two or more existing model instances which can be models that come with Astropy, user defined models, or other compound models–using Python expressions consisting of one or more of the supported binary operators.

  • In some places the term composite model is used interchangeably with compound model. However, this document uses the term composite model to refer only to the case of a compound model created from the functional composition of two or more models using the pipe operator | as explained below. This distinction is used consistently within this document, but it may be helpful to understand the distinction.

Creating compound models#

The only way to create compound models is to combine existing single models and/or compound models using expressions in Python with the binary operators +, -, *, /, **, |, and &, each of which is discussed in the following sections.

The result of combining two models is a model instance:

>>> two_gaussians = Gaussian1D(1.1, 0.1, 0.2) + Gaussian1D(2.5, 0.5, 0.1)
>>> two_gaussians  
<CompoundModel...(amplitude_0=1.1, mean_0=0.1, stddev_0=0.2, amplitude_1=2.5, mean_1=0.5, stddev_1=0.1)>

This expression creates a new model instance that is ready to be used for evaluation:

>>> two_gaussians(0.2)  
0.9985190841886609

The print function provides more information about this object:

>>> print(two_gaussians)
Model: CompoundModel...
Inputs: ('x',)
Outputs: ('y',)
Model set size: 1
Expression: [0] + [1]
Components:
    [0]: <Gaussian1D(amplitude=1.1, mean=0.1, stddev=0.2)>

    [1]: <Gaussian1D(amplitude=2.5, mean=0.5, stddev=0.1)>
Parameters:
    amplitude_0 mean_0 stddev_0 amplitude_1 mean_1 stddev_1
    ----------- ------ -------- ----------- ------ --------
            1.1    0.1      0.2         2.5    0.5      0.1

There are a number of things to point out here: This model has six fittable parameters. How parameters are handled is discussed further in the section on Parameters. We also see that there is a listing of the expression that was used to create this compound model, which in this case is summarized as [0] + [1]. The [0] and [1] refer to the first and second components of the model listed next (in this case both components are the Gaussian1D objects).

Each component of a compound model is a single, non-compound model. This is the case even when including an existing compound model in a new expression. The existing compound model is not treated as a single model–instead the expression represented by that compound model is extended. An expression involving two or more compound models results in a new expression that is the concatenation of all involved models’ expressions:

>>> four_gaussians = two_gaussians + two_gaussians
>>> print(four_gaussians)
Model: CompoundModel...
Inputs: ('x',)
Outputs: ('y',)
Model set size: 1
Expression: [0] + [1] + [2] + [3]
Components:
    [0]: <Gaussian1D(amplitude=1.1, mean=0.1, stddev=0.2)>

    [1]: <Gaussian1D(amplitude=2.5, mean=0.5, stddev=0.1)>

    [2]: <Gaussian1D(amplitude=1.1, mean=0.1, stddev=0.2)>

    [3]: <Gaussian1D(amplitude=2.5, mean=0.5, stddev=0.1)>
Parameters:
    amplitude_0 mean_0 stddev_0 amplitude_1 ... stddev_2 amplitude_3 mean_3 stddev_3
    ----------- ------ -------- ----------- ... -------- ----------- ------ --------
            1.1    0.1      0.2         2.5 ...      0.2         2.5    0.5      0.1

Operators#

Arithmetic operators#

Compound models can be created from expressions that include any number of the arithmetic operators +, -, *, /, and **, which have the same meanings as they do for other numeric objects in Python.

Note

In the case of division / always means floating point division–integer division and the // operator is not supported for models).

As demonstrated in previous examples, for models that have a single output the result of evaluating a model like A + B is to evaluate A and B separately on the given input, and then return the sum of the outputs of A and B. This requires that A and B take the same number of inputs and both have a single output.

It is also possible to use arithmetic operators between models with multiple outputs. Again, the number of inputs must be the same between the models, as must be the number of outputs. In this case the operator is applied to the operators element-wise, similarly to how arithmetic operators work on two Numpy arrays.

Model composition#

The sixth binary operator that can be used to create compound models is the composition operator, also known as the “pipe” operator | (not to be confused with the boolean “or” operator that this implements for Python numeric objects). A model created with the composition operator like M = F | G, when evaluated, is equivalent to evaluating \(g \circ f = g(f(x))\).

Note

The fact that the | operator has the opposite sense as the functional composition operator \(\circ\) is sometimes a point of confusion. This is in part because there is no operator symbol supported in Python that corresponds well to this. The | operator should instead be read like the pipe operator of UNIX shell syntax: It chains together models by piping the output of the left-hand operand to the input of the right-hand operand, forming a “pipeline” of models, or transformations.

This has different requirements on the inputs/outputs of its operands than do the arithmetic operators. For composition all that is required is that the left-hand model has the same number of outputs as the right-hand model has inputs.

For simple functional models this is exactly the same as functional composition, except for the aforementioned caveat about ordering. For example, to create the following compound model:

digraph { in0 [shape="none", label="input 0"]; out0 [shape="none", label="output 0"]; redshift0 [shape="box", label="RedshiftScaleFactor"]; gaussian0 [shape="box", label="Gaussian1D(1, 0.75, 0.1)"]; in0 -> redshift0; redshift0 -> gaussian0; gaussian0 -> out0; }

import numpy as np
import matplotlib.pyplot as plt
from astropy.modeling.models import RedshiftScaleFactor, Gaussian1D

x = np.linspace(0, 1.2, 100)
g0 = RedshiftScaleFactor(0) | Gaussian1D(1, 0.75, 0.1)

plt.figure(figsize=(8, 5))
plt.plot(x, g0(x), 'g--', label='$z=0$')

for z in (0.2, 0.4, 0.6):
    g = RedshiftScaleFactor(z) | Gaussian1D(1, 0.75, 0.1)
    plt.plot(x, g(x), color=plt.cm.OrRd(z),
             label=f'$z={z}$')

plt.xlabel('Energy')
plt.ylabel('Flux')
plt.legend()

(png, svg, pdf)

../../_images/compound-models-3.png

If you wish to perform redshifting in the wavelength space instead of energy, and would also like to conserve flux, here is another way to do it using model instances:

import numpy as np
import matplotlib.pyplot as plt
from astropy.modeling.models import RedshiftScaleFactor, Gaussian1D, Scale

x = np.linspace(1000, 5000, 1000)
g0 = Gaussian1D(1, 2000, 200)  # No redshift is same as redshift with z=0

plt.figure(figsize=(8, 5))
plt.plot(x, g0(x), 'g--', label='$z=0$')

for z in (0.2, 0.4, 0.6):
    rs = RedshiftScaleFactor(z).inverse  # Redshift in wavelength space
    sc = Scale(1. / (1 + z))  # Rescale the flux to conserve energy
    g = rs | g0 | sc
    plt.plot(x, g(x), color=plt.cm.OrRd(z),
             label=f'$z={z}$')

plt.xlabel('Wavelength')
plt.ylabel('Flux')
plt.legend()

(png, svg, pdf)

../../_images/compound-models-4.png

When working with models with multiple inputs and outputs the same idea applies. If each input is thought of as a coordinate axis, then this defines a pipeline of transformations for the coordinates on each axis (though it does not necessarily guarantee that these transformations are separable). For example:

digraph { in0 [shape="none", label="input 0"]; in1 [shape="none", label="input 1"]; out0 [shape="none", label="output 0"]; out1 [shape="none", label="output 1"]; rot0 [shape="box", label="Rotation2D"]; gaussian0 [shape="box", label="Gaussian2D(1, 0, 0, 0.1, 0.3)"]; in0 -> rot0; in1 -> rot0; rot0 -> gaussian0; rot0 -> gaussian0; gaussian0 -> out0; gaussian0 -> out1; }

import numpy as np
import matplotlib.pyplot as plt
from astropy.modeling.models import Rotation2D, Gaussian2D

x, y = np.mgrid[-1:1:0.01, -1:1:0.01]

plt.figure(figsize=(8, 2.5))

for idx, theta in enumerate((0, 45, 90)):
    g = Rotation2D(theta) | Gaussian2D(1, 0, 0, 0.1, 0.3)
    plt.subplot(1, 3, idx + 1)
    plt.imshow(g(x, y), origin='lower')
    plt.xticks([])
    plt.yticks([])
    plt.title(f'Rotated $ {theta}^\circ $')

(png, svg, pdf)

../../_images/compound-models-5.png

Note

The above example is a bit contrived in that Gaussian2D already supports an optional rotation parameter. However, this demonstrates how coordinate rotation could be added to arbitrary models.

Normally it is not possible to compose, say, a model with two outputs and a function of only one input:

>>> from astropy.modeling.models import Rotation2D
>>> Rotation2D() | Gaussian1D()  
Traceback (most recent call last):
...
ModelDefinitionError: Unsupported operands for |: Rotation2D (n_inputs=2, n_outputs=2) and Gaussian1D (n_inputs=1, n_outputs=1); n_outputs for the left-hand model must match n_inputs for the right-hand model.

However, as we will see in the next section, Model concatenation, provides a means of creating models that apply transformations to only some of the outputs from a model, especially when used in concert with mappings.

Model concatenation#

The concatenation operator &, sometimes also referred to as a “join”, combines two models into a single, fully separable transformation. That is, it makes a new model that takes the inputs to the left-hand model, concatenated with the inputs to the right-hand model, and returns a tuple consisting of the two models’ outputs concatenated together, without mixing in any way. In other words, it simply evaluates the two models in parallel–it can be thought of as something like a tuple of models.

For example, given two coordinate axes, we can scale each coordinate by a different factor by concatenating two Scale models.

digraph { in0 [shape="none", label="input 0"]; in1 [shape="none", label="input 1"]; out0 [shape="none", label="output 0"]; out1 [shape="none", label="output 1"]; scale0 [shape="box", label="Scale(factor=1.2)"]; scale1 [shape="box", label="Scale(factor=3.4)"]; in0 -> scale0; scale0 -> out0; in1 -> scale1; scale1 -> out1; }

>>> from astropy.modeling.models import Scale
>>> separate_scales = Scale(factor=1.2) & Scale(factor=3.4)
>>> separate_scales(1, 2)  
(1.2, 6.8)

We can also combine concatenation with composition to build chains of transformations that use both “1D” and “2D” models on two (or more) coordinate axes:

digraph { in0 [shape="none", label="input 0"]; in1 [shape="none", label="input 1"]; out0 [shape="none", label="output 0"]; out1 [shape="none", label="output 1"]; scale0 [shape="box", label="Scale(factor=1.2)"]; scale1 [shape="box", label="Scale(factor=3.4)"]; rot0 [shape="box", label="Rotation2D(90)"]; in0 -> scale0; scale0 -> rot0; in1 -> scale1; scale1 -> rot0; rot0 -> out0; rot0 -> out1; }

>>> scale_and_rotate = ((Scale(factor=1.2) & Scale(factor=3.4)) |
...                     Rotation2D(90))
>>> scale_and_rotate.n_inputs
2
>>> scale_and_rotate.n_outputs
2
>>> scale_and_rotate(1, 2)  
(-6.8, 1.2)

This is of course equivalent to an AffineTransformation2D with the appropriate transformation matrix:

>>> from numpy import allclose
>>> from astropy.modeling.models import AffineTransformation2D
>>> affine = AffineTransformation2D(matrix=[[0, -3.4], [1.2, 0]])
>>> # May be small numerical differences due to different implementations
>>> allclose(scale_and_rotate(1, 2), affine(1, 2))
True

Other Topics#

Model names#

In the above two examples another notable feature of the generated compound model classes is that the class name, as displayed when printing the class at the command prompt, is not “TwoGaussians”, “FourGaussians”, etc. Instead it is a generated name consisting of “CompoundModel” followed by an essentially arbitrary integer that is chosen simply so that every compound model has a unique default name. This is a limitation at present, due to the limitation that it is not generally possible in Python when an object is created by an expression for it to “know” the name of the variable it will be assigned to, if any. It is possible to directly assign a name to the compound model instance by using the Model.name attribute:

>>> two_gaussians.name = "TwoGaussians"
>>> print(two_gaussians)  
Model: CompoundModel...
Name: TwoGaussians
Inputs: ('x',)
Outputs: ('y',)
Model set size: 1
Expression: [0] + [1]
Components:
    [0]: <Gaussian1D(amplitude=1.1, mean=0.1, stddev=0.2)>

    [1]: <Gaussian1D(amplitude=2.5, mean=0.5, stddev=0.1)>
Parameters:
    amplitude_0 mean_0 stddev_0 amplitude_1 mean_1 stddev_1
    ----------- ------ -------- ----------- ------ --------
            1.1    0.1      0.2         2.5    0.5      0.1

Indexing and slicing#

As seen in some of the previous examples in this document, when creating a compound model each component of the model is assigned an integer index starting from zero. These indices are assigned simply by reading the expression that defined the model, from left to right, regardless of the order of operations. For example:

>>> from astropy.modeling.models import Const1D
>>> A = Const1D(1.1, name='A')
>>> B = Const1D(2.1, name='B')
>>> C = Const1D(3.1, name='C')
>>> M = A + B * C
>>> print(M)
Model: CompoundModel...
Inputs: ('x',)
Outputs: ('y',)
Model set size: 1
Expression: [0] + [1] * [2]
Components:
    [0]: <Const1D(amplitude=1.1, name='A')>

    [1]: <Const1D(amplitude=2.1, name='B')>

    [2]: <Const1D(amplitude=3.1, name='C')>
Parameters:
    amplitude_0 amplitude_1 amplitude_2
    ----------- ----------- -----------
            1.1         2.1         3.1

In this example the expression is evaluated (B * C) + A–that is, the multiplication is evaluated before the addition per usual arithmetic rules. However, the components of this model are simply read off left to right from the expression A + B * C, with A -> 0, B -> 1, C -> 2. If we had instead defined M = C * B + A then the indices would be reversed (though the expression is mathematically equivalent). This convention is chosen for simplicity–given the list of components it is not necessary to jump around when mentally mapping them to the expression.

We can pull out each individual component of the compound model M by using indexing notation on it. Following from the above example, M[1] should return the model B:

>>> M[1]
<Const1D(amplitude=2.1, name='B')>

We can also take a slice of the compound model. This returns a new compound model that evaluates the subexpression involving the models selected by the slice. This follows the same semantics as slicing a list or array in Python. The start point is inclusive and the end point is exclusive. So a slice like M[1:3] (or just M[1:]) selects models B and C (and all operators between them). So the resulting model evaluates just the subexpression B * C:

>>> print(M[1:])
Model: CompoundModel
Inputs: ('x',)
Outputs: ('y',)
Model set size: 1
Expression: [0] * [1]
Components:
    [0]: <Const1D(amplitude=2.1, name='B')>

    [1]: <Const1D(amplitude=3.1, name='C')>
Parameters:
    amplitude_0 amplitude_1
    ----------- -----------
            2.1         3.1

Note

There is a change in the parameter names of a slice from versions prior to 4.0. Previously, the parameter names were identical to that of the model being sliced. Now, they are what is expected for a compound model of this type apart from the model sliced. That is, the sliced model always starts with its own relative index for its components, thus the parameter names start with a 0 suffix.

Note

Starting with 4.0, the behavior of slicing is more restrictive than previously. For example if:

m = m1 * m2 + m3

and one sliced by using m[1:3] previously that would return the model: m2 + m3 even though there was never any such submodel of m. Starting with 4.0 a slice must correspond to a submodel (something that corresponds to an intermediate result of the computational chain of evaluating the compound model). So:

m1 * m2

is a submodel (i.e.,``m[:2]``) but m[1:3] is not. Currently this also means that in simpler expressions such as:

m = m1 + m2 + m3 + m4

where any slice should be valid in principle, only slices that include m1 are since it is part of all submodules (since the order of evaluation is:

((m1 + m2) + m3) + m4

Anyone creating compound models that wishes submodels to be available is advised to use parentheses explicitly or define intermediate models to be used in subsequent expressions so that they can be extracted with a slice or simple index depending on the context. For example, to make m2 + m3 accessible by slice define m as:

m = m1 + (m2 + m3) + m4. In this case ``m[1:3]`` will work.

The new compound model for the subexpression can be evaluated like any other:

>>> M[1:](0)  
6.51

Although the model M was composed entirely of Const1D models in this example, it was useful to give each component a unique name (A, B, C) in order to differentiate between them. This can also be used for indexing and slicing:

>>> print(M['B'])
Model: Const1D
Name: B
Inputs: ('x',)
Outputs: ('y',)
Model set size: 1
Parameters:
    amplitude
    ---------
          2.1

In this case M['B'] is equivalent to M[1]. But by using the name we do not have to worry about what index that component is in (this becomes especially useful when combining multiple compound models). A current limitation, however, is that each component of a compound model must have a unique name–if some components have duplicate names then they can only be accessed by their integer index.

Slicing also works with names. When using names the start and end points are both inclusive:

>>> print(M['B':'C'])
Model: CompoundModel...
Inputs: ('x',)
Outputs: ('y',)
Model set size: 1
Expression: [0] * [1]
Components:
    [0]: <Const1D(amplitude=2.1, name='B')>

    [1]: <Const1D(amplitude=3.1, name='C')>
Parameters:
    amplitude_0 amplitude_1
    ----------- -----------
            2.1         3.1

So in this case M['B':'C'] is equivalent to M[1:3].

Parameters#

A question that frequently comes up when first encountering compound models is how exactly all the parameters are dealt with. By now we’ve seen a few examples that give some hints, but a more detailed explanation is in order. This is also one of the biggest areas for possible improvements–the current behavior is meant to be practical, but is not ideal. (Some possible improvements include being able to rename parameters, and providing a means of narrowing down the number of parameters in a compound model.)

As explained in the general documentation for model parameters, every model has an attribute called param_names that contains a tuple of all the model’s adjustable parameters. These names are given in a canonical order that also corresponds to the order in which the parameters should be specified when instantiating the model.

The simple scheme used currently for naming parameters in a compound model is this: The param_names from each component model are concatenated with each other in order from left to right as explained in the section on Indexing and slicing. However, each parameter name is appended with _<#>, where <#> is the index of the component model that parameter belongs to. For example:

>>> Gaussian1D.param_names
('amplitude', 'mean', 'stddev')
>>> (Gaussian1D() + Gaussian1D()).param_names
('amplitude_0', 'mean_0', 'stddev_0', 'amplitude_1', 'mean_1', 'stddev_1')

For consistency’s sake, this scheme is followed even if not all of the components have overlapping parameter names:

>>> from astropy.modeling.models import RedshiftScaleFactor
>>> (RedshiftScaleFactor() | (Gaussian1D() + Gaussian1D())).param_names
('z_0', 'amplitude_1', 'mean_1', 'stddev_1', 'amplitude_2', 'mean_2',
'stddev_2')

On some level a scheme like this is necessary in order for the compound model to maintain some consistency with other models with respect to the interface to its parameters. However, if one gets lost it is also possible to take advantage of indexing to make things easier. When returning a single component from a compound model the parameters associated with that component are accessible through their original names, but are still tied back to the compound model:

>>> a = Gaussian1D(1, 0, 0.2, name='A')
>>> b = Gaussian1D(2.5, 0.5, 0.1, name='B')
>>> m = a + b
>>> m.amplitude_0
Parameter('amplitude', value=1.0)

is equivalent to:

>>> m['A'].amplitude
Parameter('amplitude', value=1.0)

You can think of these both as different “views” of the same parameter. Updating one updates the other:

>>> m.amplitude_0 = 42
>>> m['A'].amplitude
Parameter('amplitude', value=42.0)
>>> m['A'].amplitude = 99
>>> m.amplitude_0
Parameter('amplitude', value=99.0)

Note, however, that the original Gaussian1D instance a has been updated:

>>> a.amplitude
Parameter('amplitude', value=99.0)

This is different than the behavior in versions prior to 4.0. Now compound model parameters share the same Parameter instance as the original model.

Advanced mappings#

We have seen in some previous examples how models can be chained together to form a “pipeline” of transformations by using model composition and concatenation. To aid the creation of more complex chains of transformations (for example for a WCS transformation) a new class of “mapping” models is provided.

Mapping models do not (currently) take any parameters, nor do they perform any numeric operation. They are for use solely with the concatenation (&) and composition (|) operators, and can be used to control how the inputs and outputs of models are ordered, and how outputs from one model are mapped to inputs of another model in a composition.

Currently there are only two mapping models: Identity, and (the somewhat generically named) Mapping.

The Identity mapping simply passes one or more inputs through, unchanged. It must be instantiated with an integer specifying the number of inputs/outputs it accepts. This can be used to trivially expand the “dimensionality” of a model in terms of the number of inputs it accepts. In the section on concatenation we saw an example like:

>>> m = (Scale(1.2) & Scale(3.4)) | Rotation2D(90)

digraph { in0 [shape="none", label="input 0"]; in1 [shape="none", label="input 1"]; out0 [shape="none", label="output 0"]; out1 [shape="none", label="output 1"]; scale0 [shape="box", label="Scale(factor=1.2)"]; scale1 [shape="box", label="Scale(factor=3.4)"]; rot0 [shape="box", label="Rotation2D(90)"]; in0 -> scale0; scale0 -> rot0; in1 -> scale1; scale1 -> rot0; rot0 -> out0; rot0 -> out1; }

where two coordinate inputs are scaled individually and then rotated into each other. However, say we wanted to scale only one of those coordinates. It would be fine to simply use Scale(1) for one them, or any other model that is effectively a no-op. But that also adds unnecessary computational overhead, so we might as well simply specify that that coordinate is not to be scaled or transformed in any way. This is a good use case for Identity:

digraph { in0 [shape="none", label="input 0"]; in1 [shape="none", label="input 1"]; out0 [shape="none", label="output 0"]; out1 [shape="none", label="output 1"]; scale0 [shape="box", label="Scale(factor=1.2)"]; identity0 [shape="box", label="Identity(1)"]; rot0 [shape="box", label="Rotation2D(90)"]; in0 -> scale0; scale0 -> rot0; in1 -> identity0; identity0 -> rot0; rot0 -> out0; rot0 -> out1; }

>>> from astropy.modeling.models import Identity
>>> m = Scale(1.2) & Identity(1)
>>> m(1, 2)  
(1.2, 2.0)

This scales the first input, and passes the second one through unchanged. We can use this to build up more complicated steps in a many-axis WCS transformation. If for example we had 3 axes and only wanted to scale the first one:

digraph { in0 [shape="none", label="input 0"]; in1 [shape="none", label="input 1"]; in2 [shape="none", label="input 2"]; out0 [shape="none", label="output 0"]; out1 [shape="none", label="output 1"]; out2 [shape="none", label="output 2"]; scale0 [shape="box", label="Scale(1.2)"]; identity0 [shape="box", label="Identity(2)"]; in0 -> scale0; scale0 -> out0; in1 -> identity0; in2 -> identity0; identity0 -> out1; identity0 -> out2; }

>>> m = Scale(1.2) & Identity(2)
>>> m(1, 2, 3)  
(1.2, 2.0, 3.0)

(Naturally, the last example could also be written out Scale(1.2) & Identity(1) & Identity(1).)

The Mapping model is similar in that it does not modify any of its inputs. However, it is more general in that it allows inputs to be duplicated, reordered, or even dropped outright. It is instantiated with a single argument: a tuple, the number of items of which correspond to the number of outputs the Mapping should produce. A 1-tuple means that whatever inputs come in to the Mapping, only one will be output. And so on for 2-tuple or higher (though the length of the tuple cannot be greater than the number of inputs–it will not pull values out of thin air). The elements of this mapping are integers corresponding to the indices of the inputs. For example, a mapping of Mapping((0,)) is equivalent to Identity(1)–it simply takes the first (0-th) input and returns it:

digraph G { in0 [shape="none", label="input 0"]; subgraph cluster_A { shape=rect; color=black; label="(0,)"; a [shape=point, label=""]; } out0 [shape="none", label="output 0"]; in0 -> a; a -> out0; }

>>> from astropy.modeling.models import Mapping
>>> m = Mapping((0,))
>>> m(1.0)
1.0

Likewise Mapping((0, 1)) is equivalent to Identity(2), and so on. However, Mapping also allows outputs to be reordered arbitrarily:

digraph G { { rank=same; in0 [shape="none", label="input 0"]; in1 [shape="none", label="input 1"]; } subgraph cluster_A { shape=rect; color=black; label="(1, 0)"; { rank=same; a [shape=point, label=""]; b [shape=point, label=""]; } { rank=same; c [shape=point, label=""]; d [shape=point, label=""]; } a -> c [style=invis]; a -> d [constraint=false]; b -> c [constraint=false]; } { rank=same; out0 [shape="none", label="output 0"]; out1 [shape="none", label="output 1"]; } in0 -> a; in1 -> b; c -> out0; d -> out1; }

>>> m = Mapping((1, 0))
>>> m(1.0, 2.0)
(2.0, 1.0)

digraph G { { rank=same; in0 [shape="none", label="input 0"]; in1 [shape="none", label="input 1"]; in2 [shape="none", label="input 2"]; } subgraph cluster_A { shape=rect; color=black; label="(1, 0, 2)"; { rank=same; a [shape=point, label=""]; b [shape=point, label=""]; c [shape=point, label=""]; } { rank=same; d [shape=point, label=""]; e [shape=point, label=""]; f [shape=point, label=""]; } a -> d [style=invis]; a -> e [constraint=false]; b -> d [constraint=false]; c -> f [constraint=false]; } { rank=same; out0 [shape="none", label="output 0"]; out1 [shape="none", label="output 1"]; out2 [shape="none", label="output 2"]; } in0 -> a; in1 -> b; in2 -> c; d -> out0; e -> out1; f -> out2; }

>>> m = Mapping((1, 0, 2))
>>> m(1.0, 2.0, 3.0)
(2.0, 1.0, 3.0)

Outputs may also be dropped:

digraph G { { rank=same; in0 [shape="none", label="input 0"]; in1 [shape="none", label="input 1"]; } subgraph cluster_A { shape=rect; color=black; label="(1,)"; { rank=same; a [shape=point, label=""]; b [shape=point, label=""]; } { rank=same; c [shape=point, label=""]; } a -> c [style=invis]; b -> c [constraint=false]; } out0 [shape="none", label="output 0"]; in0 -> a; in1 -> b; c -> out0; }

>>> m = Mapping((1,))
>>> m(1.0, 2.0)
2.0

digraph G { { rank=same; in0 [shape="none", label="input 0"]; in1 [shape="none", label="input 1"]; in2 [shape="none", label="input 2"]; } subgraph cluster_A { shape=rect; color=black; label="(0, 2)"; { rank=same; a [shape=point, label=""]; b [shape=point, label=""]; c [shape=point, label=""]; } { rank=same; d [shape=point, label=""]; e [shape=point, label=""]; } a -> d [style=invis]; a -> d [constraint=false]; c -> e [constraint=false]; } { rank=same; out0 [shape="none", label="output 0"]; out1 [shape="none", label="output 1"]; } in0 -> a; in1 -> b; in2 -> c; d -> out0; e -> out1; }

>>> m = Mapping((0, 2))
>>> m(1.0, 2.0, 3.0)
(1.0, 3.0)

Or duplicated:

digraph G { in0 [shape="none", label="input 0"]; subgraph cluster_A { shape=rect; color=black; label="(0, 0)"; a [shape=point, label=""]; { rank=same; b [shape=point, label=""]; c [shape=point, label=""]; } a -> b [style=invis]; a -> b [constraint=false]; a -> c [constraint=false]; } { rank=same; out0 [shape="none", label="output 0"]; out1 [shape="none", label="output 1"]; } in0 -> a; b -> out0; c -> out1; }

>>> m = Mapping((0, 0))
>>> m(1.0)
(1.0, 1.0)

digraph G { { rank=same; in0 [shape="none", label="input 0"]; in1 [shape="none", label="input 1"]; in2 [shape="none", label="input 2"]; } subgraph cluster_A { shape=rect; color=black; label="(0, 1, 1, 2)"; { rank=same; a [shape=point, label=""]; b [shape=point, label=""]; c [shape=point, label=""]; } { rank=same; d [shape=point, label=""]; e [shape=point, label=""]; f [shape=point, label=""]; g [shape=point, label=""]; } a -> d [style=invis]; a -> d [constraint=false]; b -> e [constraint=false]; b -> f [constraint=false]; c -> g [constraint=false]; } { rank=same; out0 [shape="none", label="output 0"]; out1 [shape="none", label="output 1"]; out2 [shape="none", label="output 2"]; out3 [shape="none", label="output 3"]; } in0 -> a; in1 -> b; in2 -> c; d -> out0; e -> out1; f -> out2; g -> out3; }

>>> m = Mapping((0, 1, 1, 2))
>>> m(1.0, 2.0, 3.0)
(1.0, 2.0, 2.0, 3.0)

A complicated example that performs multiple transformations, some separable, some not, on three coordinate axes might look something like:

digraph G { { rank=same; in0 [shape="none", label="input 0"]; in1 [shape="none", label="input 1"]; in2 [shape="none", label="input 2"]; } { rank=same; poly0 [shape=rect, label="Poly1D(3, c0=1, c3=1)"]; identity0 [shape=rect, label="Identity(1)"]; poly1 [shape=rect, label="Poly1D(2, c2=1)"]; } subgraph cluster_A { shape=rect; color=black; label="(0, 2, 1)"; { rank=same; a [shape=point, label=""]; b [shape=point, label=""]; c [shape=point, label=""]; } { rank=same; d [shape=point, label=""]; e [shape=point, label=""]; f [shape=point, label=""]; } a -> d [style=invis]; d -> e [style=invis]; a -> d [constraint=false]; c -> e [constraint=false]; b -> f [constraint=false]; } poly2 [shape="rect", label="Poly2D(4, c0_0=1, c1_1=1, c2_2=2)"]; gaussian0 [shape="rect", label="Gaussian1D(1, 0, 4)"]; { rank=same; out0 [shape="none", label="output 0"]; out1 [shape="none", label="output 1"]; } in0 -> poly0; in1 -> identity0; in2 -> poly1; poly0 -> a; identity0 -> b; poly1 -> c; d -> poly2; e -> poly2; f -> gaussian0; poly2 -> out0; gaussian0 -> out1; }

>>> from astropy.modeling.models import Polynomial1D as Poly1D
>>> from astropy.modeling.models import Polynomial2D as Poly2D
>>> m = ((Poly1D(3, c0=1, c3=1) & Identity(1) & Poly1D(2, c2=1)) |
...      Mapping((0, 2, 1)) |
...      (Poly2D(4, c0_0=1, c1_1=1, c2_2=2) & Gaussian1D(1, 0, 4)))
...
>>> m(2, 3, 4)  
(41617.0, 0.7548396019890073)

This expression takes three inputs: \(x\), \(y\), and \(z\). It first takes \(x \rightarrow x^3 + 1\) and \(z \rightarrow z^2\). Then it remaps the axes so that \(x\) and \(z\) are passed in to the Polynomial2D to evaluate \(2x^2z^2 + xz + 1\), while simultaneously evaluating a Gaussian on \(y\). The end result is a reduction down to two coordinates. You can confirm for yourself that the result is correct.

This opens up the possibility of essentially arbitrarily complex transformation graphs. Currently the tools do not exist to make it easy to navigate and reason about highly complex compound models that use these mappings, but that is a possible enhancement for future versions.

Model Reduction#

In order to save much duplication in the construction of complex models, it is possible to define one complex model that covers all cases where the variables that distinguish the models are made part of the model’s input variables. The fix_inputs function allows defining models derived from the more complex one by setting one or more of the inputs to a constant value. Examples of this sort of situation arise when working out the transformations from detector pixel to RA, Dec, and lambda for spectrographs when the slit locations may be moved (e.g., fiber fed or commandable slit masks), or different orders may be selected (e.g., Eschelle). In the case of order, one may have a function of pixel x, y, spectral_order that map into RA, Dec and lambda. Without specifying spectral_order, it is ambiguous what RA, Dec and Lambda corresponds to a pixel location. It is usually possible to define a function of all three inputs. Presuming this model is general_transform then fix_inputs may be used to define the transform for a specific order as follows:

::
>>> order1_transform = fix_inputs(general_transform, {'order': 1})

creates a new compound model that takes only pixel position and generates RA, Dec, and lambda. The fix_inputs function can be used to set input values by position (0 is the first) or by input variable name, and more than one can be set in the dictionary supplied.

If the input model has a bounding_box, the generated model will have the bounding for the input coordinate removed.

Replace submodels#

replace_submodel() creates a new model by replacing a submodel with a matching name with another submodel. The number of inputs and outputs of the old and new submodels should match.

>>> from astropy.modeling import models
>>> shift = models.Shift(-1) & models.Shift(-1)
>>> scale = models.Scale(2) & models.Scale(3)
>>> scale.name = "Scale"
>>> model = shift | scale
>>> model(2, 1)  
(2.0, 0.0)
>>> new_model = model.replace_submodel('Scale', models.Rotation2D(90, name='Rotation'))
>>> new_model(2, 1)  
(6.12e-17, 1.0)