Index

A

access control lists restricting adding locus, [1], [2], [3], [4], [5] MLST scheme schemes allele breakdown allele definition records

allele designations query status allele sequence identify allele sequences adding alleles auto allele definer stop autotagger stop

B

BLAST breakdown allele provenance field scheme sequence bin two-field

browse scheme profiles BURST

C

caching schemes client databases

codon usage Locus Explorer composite fields

E

extended attributes locus provenance fields

F

filters

G

Genome Comparator genome filtering in silico hybridization in silico PCR

groups scheme

H

hosts mapping

I

identify allele sequence sequence type in silico hybridization

in silico PCR isolate records isolate record options

L

loci modifying display locus adding, [1], [2], [3], [4], [5] adding; copying existing record extended attributes

Locus Explorer codon usage polymorphic sites translated sequences locus positions setting

M

main results table options mapping hosts materialized views MLST

MLST scheme adding mod_perl modifying display loci schemes

O

offline curation auto allele definer autotagger options isolate record main results table provenance fields query

P

partitioning sets passwords setting setting; first user performance caching schemes materialized views mod_perl permissions locus curation scheme curation plugins enabling

polymorphic sites Locus Explorer polymorphisms profile records profiles projects provenance field breakdown provenance fields extended attributes options

Q

query allele designations options scheme profiles sequence tags

R

records allele definition isolate profile sequence bin sequence tag

rule-based queries

S

scheme breakdown groups scheme profiles browse query schemes adding caching modifying display sequence bin breakdown records sequence similarity determining

sequence tag records status sequence tags query sequence type identify sets partitioning settings validation stop auto allele definer autotagger

T

translated sequences Locus Explorer

two-field breakdown

U

unique combinations updates disabling

user types users adding