BOLD images

One individual report per input functional timeseries will be generated in the path <output_dir>/reports/sub-IDxxx_task-name_bold.html`. An example report is given here.

The individual report for the functional images is structured as follows:

Summary

The first section summarizes some important information:

• subject identifier, date and time of execution of mriqc, software version;

• workflow details and flags raised during execution; and

• the extracted IQMs.

Visual reports

The section with visual reports contains:

1. Mosaic view of the average BOLD signal.

   

2. Mosaic view of the temporal standard deviation.

   

3. Summary plot, showing the slice-wise signal intensity at the extremes for the identification of spikes, the outliers metric, the DVARS and the FD. Finally the so-called carpetplot [Power2016]

   

Verbose reports

If mriqc was run with the --verbose-reports flag, the following plots will be appended:

1. Mosaic view of the average BOLD signal, zoomed-in to the bounding box of brain activation.

   

2. Mosaic view of the average BOLD signal, with background enhancement.

   

3. One rows of axial views at different Z-axis points showing the calculated brain mask.

   

4. Mosaic view with animation for assessment of the co-registration to MNI space (roll over the image to activate the animation).

   

Metadata

If some metadata was found in the BIDS structure, it is reported here.

References

Power2016

Power JD, A simple but useful way to assess fMRI scan qualities. NeuroImage. 2016. doi: 10.1016/j.neuroimage.2016.08.009