Nextflow’s documentation!
Contents:
- Get started
- Basic concepts
- Nextflow scripting
- Processes
- Channels
- Operators
- branch
- buffer
- choice
- close
- collate
- collect
- collectFile
- combine
- concat
- count
- countBy
- cross
- distinct
- dump
- filter
- first
- flatMap
- flatten
- groupBy
- groupTuple
- ifEmpty
- into
- join
- last
- map
- max
- merge
- min
- mix
- multiMap
- phase
- println
- randomSample
- reduce
- separate
- set
- splitCsv
- splitFasta
- splitFastq
- splitText
- spread
- sum
- take
- tap
- toInteger
- toList
- toSortedList
- transpose
- unique
- until
- view
- Executors
- Configuration
- DSL 2
- Command line interface (CLI)
- Containers
- Wave containers
- Fusion file system
- Conda environments
- Amazon Cloud
- Amazon S3 storage
- Azure Cloud
- Google Cloud
- Apache Ignite
- Kubernetes
- Tracing & visualisation
- Metrics
- Pipeline sharing
- Workflow introspection
- Mail & Notifications
- Plugins
- Secrets