Credits

Citations

Cite [A1] if you use TomoBank

Cite [A2] if using Data Exchange

Cite [A3] if using tomoPy

A1

Francesco De Carlo, Doğa Gürsoy, Daniel J Ching, K Joost Batenburg, Wolfgang Ludwig, Lucia Mancini, Federica Marone, Rajmund Mokso, Daniël M Pelt, Jan Sijbers, and Mark Rivers. Tomobank: a tomographic data repository for computational x-ray science. Measurement Science and Technology, 29(3):034004, 2018. URL: http://stacks.iop.org/0957-0233/29/i=3/a=034004.

A2

Francesco De Carlo, Doǧa Gürsoy, Federica Marone, Mark Rivers, Dilworth Y. Parkinson, Faisal Khan, Nicholas Schwarz, David J. Vine, Stefan Vogt, Sophie-Charlotte Gleber, Suresh Narayanan, Matt Newville, Tony Lanzirotti, Yue Sun, Young Pyo Hong, and Chris Jacobsen. Scientific data exchange: a schema for HDF5-based storage of raw and analyzed data. Journal of Synchrotron Radiation, 21(6):1224–1230, Nov 2014. URL: https://doi.org/10.1107/S160057751401604X, doi:10.1107/S160057751401604X.

A3

Doǧa Gürsoy, Francesco De Carlo, Xianghui Xiao, and Chris Jacobsen. TomoPy: a framework for the analysis of synchrotron tomographic data. Journal of Synchrotron Radiation, 21(5):1188–1193, Sep 2014. URL: https://doi.org/10.1107/S1600577514013939, doi:10.1107/S1600577514013939.

References

B1

William E. Allcock, Benjamin S. Allen, Rachana Ananthakrishnan, Ben Blaiszik, Kyle Chard, Ryan Chard, Ian Foster, Lukasz Lacinski, Michael E. Papka, and Rick Wagner. Petrel: a programmatically accessible research data service. In Proceedings of the Practice and Experience in Advanced Research Computing on Rise of the Machines (Learning), PEARC ’19. New York, NY, USA, 2019. Association for Computing Machinery. URL: https://doi.org/10.1145/3332186.3332241, doi:10.1145/3332186.3332241.

B2

F. Brun, G. Turco, S. Paoletti, and A. Accardo. World Congress on Medical Physics and Biomedical Engineering, June 7-12, 2015, Toronto, Canada, chapter A synchrotron radiation microtomography study of wettability and swelling of nanocomposite Alginate/Hydroxyapatite scaffolds for bone tissue engineering, pages 288–291. Springer International Publishing, Cham, 2015. URL: http://dx.doi.org/10.1007/978-3-319-19387-8_70.

B3

Marcel Burger, Alexander Gundlach-Graham, Steffen Allner, Gunnar Schwarz, Hao A. O. Wang, Luzia Gyr, Simon Burgener, Bodo Hattendorf, Daniel Grolimund, and Detlef Günther. High-speed, high-resolution, multielemental la-icp-tofms imaging: part ii. critical evaluation of quantitative three-dimensional imaging of major, minor, and trace elements in geological samples. Analytical Chemistry, 87(16):8259–8267, 2015. PMID: 26185891. URL: http://dx.doi.org/10.1021/acs.analchem.5b01977, arXiv:http://dx.doi.org/10.1021/acs.analchem.5b01977, doi:10.1021/acs.analchem.5b01977.

B4

Minna Bührer, Marco Stampanoni, Xavier Rochet, Felix Büchi, Jens Eller, and Federica Marone. High-numerical-aperture macroscope optics for time-resolved experiments. Journal of Synchrotron Radiation, 26(4):1161–1172, Jul 2019. URL: https://doi.org/10.1107/S1600577519004119, doi:10.1107/S1600577519004119.

B5

S. Singh; T. J. Stannard; S. S. Singh; A. S. S. Singaravelu; X. Xiao; N. Chawla. Varied volume fractions of borosilicate glass spheres with diameter gaussian distributed from 38-45 micronsen cased in a polypropylene matrix. TBD, 00(3):00–00, June 2016.

B6

T. J. Stannard; J. J. Williams; S. S. Singh; A. S. S. Singaravelu; X. Xiao; N. Chawla. Synchrotron x-ray tomography for three-dimensional time-resolved observations of fatigue crack initiation and growth from corrosion pits in peak-aged al7075 alloy. TBD, 00(0):00–00, June 2017.

B7

Daniel J. Ching and Doǧa Gürsoy. \it XDesign: an open-source software package for designing X-ray imaging phantoms and experiments. Journal of Synchrotron Radiation, 24(2):537–544, Mar 2017. URL: https://doi.org/10.1107/S1600577517001928, doi:10.1107/S1600577517001928.

B8

P. Cloetens, W. Ludwig, J. Baruchel, D. Van Dyck, J. Van Landuyt, J. P. Guigay, and M. Schlenker. Holotomography: quantitative phase tomography with micrometer resolution using hard synchrotron radiation x rays. Applied Physics Letters, 75(19):2912–2914, 1999. URL: http://dx.doi.org/10.1063/1.125225, arXiv:http://dx.doi.org/10.1063/1.125225, doi:10.1063/1.125225.

B9

Gürsoy D, De Carlo F, Xiao X, and Jacobsen C. Tomopy: a framework for the analysis of synchrotron tomographic data. Journal of Synchrotron Radiation, 21(5):1188–1193, 2014.

B10

Pelt D, Gürsoy D, Palenstijn WJ, Sijbers J, De Carlo F, and Batenburg KJ. Integration of tomopy and the astra toolbox for advanced processing and reconstruction of tomographic synchrotron data. Journal of Synchrotron Radiation, 23(3):842–849, 2016.

B11

DOI. The digital object identifier. 2016. URL: http://dx.doi.org/ (visited on 2016-11-19).

B12

Betsy A Dowd, Graham H. Campbell, Robert B.Marr, Vivek V. Nagarkar, Sameer V. Tipnis, Lisa Axe, and D. P. Siddons. Developments in synchrotron x-ray computed microtomography at the national synchrotron light source. In Developments in X-Ray Tomography II, volume 3772, 224–236. 1999. doi:10.1117/12.363725.

B13

Diego Dreossi, Lucia Mancini, Geert Van Eyndhoven, Vincent Van Nieuwenhove, and Jan Sijbers. The trabecular bone data set. 2015.

B14

DXchange. The data exchange toolbox. 2016. URL: http://dxchange.readthedocs.io/en/latest/source/demo.html (visited on 2016-11-19).

B15

ESRF. The edf file format. 2016. URL: http://www.esrf.eu/Instrumentation/software/data-analysis/OurSoftware/SAXS/SaxsHeader (visited on 2016-11-19).

B16

De Carlo F, Gursoy D, Marone F, Rivers M, Parkinson YD, Khan F, Schwarz N, Vine DJ, Vogt S, Gleber SC, Narayanan S, Newville M, Lanzirotti T, Sun Y, Hong YP, and Jacobsen C. Scientific data exchange: a schema for hdf5-based storage of raw and analyzed data. Journal of Synchrotron Radiation, 21(6):1224–1230, 2014.

B17

Globus. Globus. 2016. URL: https://www.globus.org/ (visited on 2016-11-19).

B18

Jean Pierre Guigay, Max Langer, Renaud Boistel, and Peter Cloetens. Mixed transfer function and transport of intensity approach for phase retrieval in the fresnel region. Opt. Lett., 32(12):1617–1619, Jun 2007. URL: http://ol.osa.org/abstract.cfm?URI=ol-32-12-1617, doi:10.1364/OL.32.001617.

B19

Alexander Gundlach-Graham, Marcel Burger, Steffen Allner, Gunnar Schwarz, Hao A. O. Wang, Luzia Gyr, Daniel Grolimund, Bodo Hattendorf, and Detlef Günther. High-speed, high-resolution, multielemental laser ablation-inductively coupled plasma-time-of-flight mass spectrometry imaging: part i. instrumentation and two-dimensional imaging of geological samples. Analytical Chemistry, 87(16):8250–8258, 2015. PMID: 26122331. URL: http://dx.doi.org/10.1021/acs.analchem.5b01196, arXiv:http://dx.doi.org/10.1021/acs.analchem.5b01196, doi:10.1021/acs.analchem.5b01196.

B20

Waruntorn Kanitpanyacharoen, Dilworth Y. Parkinson, Francesco De Carlo, Federica Marone, Marco Stampanoni, Rajmund Mokso, Alastair MacDowell, and Hans-Rudolf Wenk. A comparative study of X-ray tomographic microscopy on shales at different synchrotron facilities: ALS, APS and SLS. Journal of Synchrotron Radiation, 20(1):172–180, Jan 2013. URL: https://doi.org/10.1107/S0909049512044354, doi:10.1107/S0909049512044354.

B21

Waruntorn Kanitpanyacharoen, Dilworth Y. Parkinson, Francesco De Carlo, Federica Marone, Marco Stampanoni, Rajmund Mokso, Alastair MacDowell, and Hans-Rudolf Wenk. The round-robin data set. 2017. doi:10.17038/XSD/1344306.

B22

Daniil Kazantsev, Valery Pickalov, Srikanth Nagella, Edoardo Pasca, and Philip J Withers. Tomophantom, a software package to generate 2d–4d analytical phantoms for ct image reconstruction algorithm benchmarks. SoftwareX, 7:150–155, 2018.

B23

Alexander Kostenko, K. Joost Batenburg, Andrew King, S. Erik Offerman, and Lucas J. van Vliet. Total variation minimization approach in in-line x-ray phase-contrast tomography. Opt. Express, 21(10):12185–12196, May 2013. URL: http://www.opticsexpress.org/abstract.cfm?URI=oe-21-10-12185, doi:10.1364/OE.21.012185.

B24

Larsson. From kitchen tomography to a cutting edge neutron imaging beamline. 2022. URL: https://www.linxs.se/news/2021/10/11/from-kitchen-tomography-to-a-cutting-edge-neutron-imaging-beamlinenbsp (visited on 2022-12-07).

B25

Emanuel Larsson, Doğa Gürsoy, and Stephen A. Hall. Kitchen-based light tomography - a diy toolkit for advancing tomography - by and for the tomography community. Tomography of Materials and Structures, pages 100001, 2022. URL: https://www.sciencedirect.com/science/article/pii/S2949673X22000018, doi:https://doi.org/10.1016/j.tmater.2022.100001.

B26

Emanuel Larsson, Malte Storm, Fabian Wilde, Markus Ziehmer, Kaixiong Hu, Doga Gursoy, Francesco De Carlo, Erica Lilleoddena, Martin Müller, and Imke Grevinga. A novel 3d test pattern for full-field transmission x-ray microscopy – nanoporous gold. Journal of Synchrotron Radiation, xx(x):xxxx–xxxx, 2018.

B27

Emanuel Larsson, Malte Storm, Fabian Wilde, Markus Ziehmer, Kaixiong Hu, Doga Gursoy, Francesco De Carlo, Erica Lilleoddena, Martin Müller, and Imke Grevinga. The nanoporous gold data set. 2018. doi:10.17038/XSD/1454422.

B28

Yijin Liu, Florian Meirer, Phillip A. Williams, Junyue Wang, Joy C. Andrews, and Piero Pianetta. Txm-wizard: a program for advanced data collection and evaluation in full-field transmission x-ray microscopy. Journal of Synchrotron Radiation, 19(2):281–287, Mar 2012. URL: https://doi.org/10.1107/S0909049511049144, doi:10.1107/S0909049511049144.

B29

Yijin Liu, Florian Meirer, Phillip A. Williams, Junyue Wang, Joy C. Andrews, and Piero Pianetta. \it TXM-Wizard: a program for advanced data collection and evaluation in full-field transmission X-ray microscopy. Journal of Synchrotron Radiation, 19(2):281–287, Mar 2012. URL: https://doi.org/10.1107/S0909049511049144, doi:10.1107/S0909049511049144.

B30

Lorentz. Advanced x-ray tomography: experiment, modeling, and algorithms. 2014. URL: https://www.lorentzcenter.nl/lc/web/2014/614/info.php3?wsid=614 (visited on 2016-11-19).

B31

Lorentz. Artefacts in x-ray tomography. 2015. URL: https://www.lorentzcenter.nl/lc/web/2015/689/info.php3?wsid=689 (visited on 2016-11-19).

B32

Lorentz. Quantitative 3d x-ray imaging: from tomographic images to metrics. 2016. URL: https://www.lorentzcenter.nl/lc/web/2016/781/info.php3?wsid=781 (visited on 2016-11-19).

B33

Eric Maire, Paul Merle, Gilles Peix, Jose Baruchel, and Jean-Yves Buffier. X-ray tomography in material science. Hermes science publications, France, 2000.

B34

Rajmund Mokso, Christian M. Schlepuetz, Gerd Theidel, Heiner Billich, Elmar Schmid, Tine Celcer, Gordan Mikuljan, Leonardo Sala, Federica Marone, Nick Schlumpf, and Marco Stampanoni. Gigafrost: the gigabit fast readout system for tomography. Journal of Synchrotron Radiation, 24(6):1250–1259, 2017. doi:{10.1107/S1600577517013522}.

B35

D. Paganin, S. C. Mayo, T. E. Gureyev, P. R. Miller, and S. W. Wilkins. Simultaneous phase and amplitude extraction from a single defocused image of a homogeneous object. Journal of Microscopy, 206(1):33–40, 2002. URL: http://dx.doi.org/10.1046/j.1365-2818.2002.01010.x, doi:10.1046/j.1365-2818.2002.01010.x.

B36

Christophe Raufaste, Benjamin Dollet, Kevin Mader, Stephane Santucci, and Rajmund Mokso. Three-dimensional foam flow resolved by fast X-ray tomographic microscopy. EPL, 111:38004, 2015.

B37

L. A. Shepp and B. F. Logan. The fourier reconstruction of a head section. IEEE Transactions on Nuclear Science, 21(3):21–43, June 1974. doi:10.1109/TNS.1974.6499235.

B38

Somya Singh, Tyler Stannard, Sudhanshu Singh, Arun Singaravelu, Xianghui Xiao, and Nikhilesh Chawla. Varied volume fractions of borosilicate glass spheres with diameter gaussian distributed from 38-45 micronsen cased in a polypropylene matrix. 2017. doi:10.17038/XSD/1373576.

B39

Tyler Stannard, Jason Williams, Sudhanshu Singh, Arun Singaravelu, Xianghui Xiao, and Nikhilesh Chawla. Synchrotron x-ray tomography for three-dimensional time-resolved observations of fatigue crack initiation and growth from corrosion pits in peak-aged al7075 alloy. 2017. doi:10.17038/XSD/1373575.

B40

Zeliang Su, Vincent De Andrade, Sorina Cretu, Yinghui Yin, Michael J. Wojcik, Alejandro A. Franco, and Arnaud Demortière. X-ray nanocomputed tomography in zernike phase contrast for studying 3d morphology of li–o2 battery electrode. ACS Applied Energy Materials, 3(5):4093–4102, 2020. URL: https://doi.org/10.1021/acsaem.9b02236, arXiv:https://doi.org/10.1021/acsaem.9b02236, doi:10.1021/acsaem.9b02236.

B41

tiff. The tiff file format. 2016. URL: https://en.wikipedia.org/wiki/TIFF (visited on 2016-11-19).

B42

TomoBank. The tomography data bank. 2016. URL: http://www.aps.anl.gov/tomobank (visited on 2016-11-19).

B43

Ziheng Wu, Debomita Basu, John L. L. Meyer, Elizabeth Larson, Robin Kuo, Jack Beuth, and Anthony Rollett. Study of powder gas entrapment and its effects on porosity in 17-4 ph stainless steel parts fabricated in laser powder bed fusion. JOM, 73(1):177–188, Jan 2021. URL: https://doi.org/10.1007/s11837-020-04491-z, doi:10.1007/s11837-020-04491-z.

B44

Haiyan Yu, Sihao Xia, Chenxi Wei, Yuwei Mao, Daniel Larsson, Xianghui Xiao, Piero Pianetta, Young-Sang Yu, and Yijin Liu. Automatic projection image registration for nanoscale X-ray tomographic reconstruction. Journal of Synchrotron Radiation, 25(6):1819–1826, Nov 2018. URL: https://doi.org/10.1107/S1600577518013929, doi:10.1107/S1600577518013929.

B45

V. V. Nikitin, M. Carlsson, F. Andersson, and R. Mokso. Four-dimensional tomographic reconstruction by time domain decomposition. IEEE Transactions on Computational Imaging, 5(3):409–419, Sep. 2019. doi:10.1109/TCI.2019.2898088.