pmrna - filter out all but the primary isoform from each gene of
the input
pmrna [options] < annot.gff3 >
new.gff3
Options:
- -h|--help
- print this help message and exit
- -i|--introns
- flag indicating that introns are declared explicitly and do not need to be
inferred from exon features; default is to infer introns
- -l|--locus
- report a single representative mRNA for each locus instead of each
gene
- -m|--map: FILE
- write each gene/mRNA mapping to the specified file
- -p|--pseudogenes
- disable pseudogene detection and correction