BIO-RAINBOW(1) | User Commands | BIO-RAINBOW(1) |
bio-rainbow - clustering and assembling short reads for bioinformatics
rainbow <cmd> [options]
rainbow 2.0.4 -- <ruanjue@gmail.com, chongzechen@gmail.com>
Input File Format: paired fasta/fastq file(s) Output File Format: <seqid:int>\t<cluster_id:int>\t<read1:string>\t<read2:string>
-1 <string> Input fasta/fastq file, supports multiple '-1'
-2 <string> Input fasta/fastq file, supports multiple '-2' [null]
Input File Format: <seqid:int>\t<cluster_id:int>\t<read1:string>\t<read2:string> Output File Format: <seqid:int>\t<cluster_id:int>\t<read1:string>\t<read2:string>[\t<pre_cluster_id:int>]
-i <string> Input file [stdin]
-o <string> Output file [stdout]
Input File Format: <seqid:int>\t<cluster_id:int>\t<read1:string>\t<read2:string>[\t<pre_cluster_id:int>]
-i <string> Input rbasm output file [stdin]
-o <string> Output file for merged contigs, one line per cluster [stdout]
This manpage was written by Andreas Tille for the Debian distribution and can be used for any other usage of the program.
July 2018 | bio-rainbow 2.0.4 |