bowtie-inspect - extracts information from a bowtie index
bowtie-inspect [options]*
<ebwt_base>
- <ebwt_base>
- ebwt filename minus trailing .1.ebwt/.2.ebwt
- By default, prints FASTA records of the indexed nucleotide sequences to
standard out. With -n, just prints names. With -s, just
prints a summary of the index parameters and sequences. With -e,
preserves colors if applicable.
- --large-index
- force inspection of the 'large' index, even if a 'small' one is
present.
- -a/--across
<int>
- Number of characters across in FASTA output (default: 60)
- -n/--names
- Print reference sequence names only
- -s/--summary
- Print summary incl. ref names, lengths, index properties
- -e/--ebwt-ref
- Reconstruct reference from ebwt (slow, preserves colors)
- -v/--verbose
- Verbose output (for debugging)
- -h/--help
- print detailed description of tool and its options
- --help
- print this usage message
64-bit Built on Debian-reproducible Wed, 05 Sep 2018 14:34:56
+0000 Compiler: gcc version 8.2.0 Options: -O3
-Wl,--hash-style=both -DWITH_TBB -Wdate-time
-D_FORTIFY_SOURCE=2 -g -O2
-fdebug-prefix-map=.=. -fstack-protector-strong
-Wformat -Werror=format-security -g -O2
-fdebug-prefix-map=.=. -fstack-protector-strong
-Wformat -Werror=format-security
-std=c++03 -Wl,-z,relro -Wl,-z,now Sizeof {int,
long, long long, void*, size_t, off_t}: {4, 8, 8, 8, 8, 8}