DOKK / manpages / debian 10 / bowtie / bowtie-inspect-debug.1.en
BOWTIE-INSPECT(1) User Commands BOWTIE-INSPECT(1)

bowtie-inspect - extracts information from a bowtie index

bowtie-inspect [options]* <ebwt_base>

<ebwt_base>
ebwt filename minus trailing .1.ebwt/.2.ebwt
By default, prints FASTA records of the indexed nucleotide sequences to standard out. With -n, just prints names. With -s, just prints a summary of the index parameters and sequences. With -e, preserves colors if applicable.

force inspection of the 'large' index, even if a 'small' one is present.
Number of characters across in FASTA output (default: 60)
Print reference sequence names only
Print summary incl. ref names, lengths, index properties
Reconstruct reference from ebwt (slow, preserves colors)
Verbose output (for debugging)
print detailed description of tool and its options
print this usage message

64-bit Built on Debian-reproducible Wed, 05 Sep 2018 14:34:56 +0000 Compiler: gcc version 8.2.0 Options: -O3 -Wl,--hash-style=both -DWITH_TBB -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=.=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=.=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++03 -Wl,-z,relro -Wl,-z,now Sizeof {int, long, long long, void*, size_t, off_t}: {4, 8, 8, 8, 8, 8}

September 2018 bowtie-inspect version 1.2.2