GMOD_FASTA2GFF3(1p) | User Contributed Perl Documentation | GMOD_FASTA2GFF3(1p) |
$O - Convert FASTA to simple GFF3
% $O [options]
--fasta_dir Directory contain fasta files (default: ./fasta) --gfffilename Name of GFF3 file to be created (default: ./out.gff) --type SO type to assign to each feature (default: EST) --source Text to appear in source column (default: .) --attributes Additional tag=value pairs to appear in column 9 --nosequence Suppress the ##FASTA section (ie, don't print DNA sequences)
This script simply takes a collection of fasta files and converts them to simple GFF3 suitable for loading into chado.
Scott Cain <cain@cshl.org>
Copyright (c) 2006
This library is free software; you can redistribute it and/or modify it under the same terms as Perl itself.
2018-09-27 | perl v5.26.2 |