GMOD_LOAD_CVTERMS(1p) | User Contributed Perl Documentation | GMOD_LOAD_CVTERMS(1p) |
load_cvterms.pl - compares which terms are new in the file compared to the database and inserts them
Usage: perl load_cvterms.pl -H dbhost -D dbname [-vdntuFo] file
parameters
The following options are required if not using GMOD profile
The script parses the ontology in the file and the corresponding ontology in the database, if present. It compares which terms are new in the file compared to the database and inserts them, and compares all the relationships that are new and inserts them. It removes the relationships that were not specified in the file from the database. It never removes a term entry from the database.
This script works with Chado schema (see gmod.org) and accesse the following tables:
Terms that are in the database but not in the file are set to is_obsolete=1. All the terms that are present in the database are updated (if using -u option) to reflect the term definitions that are in the file. New terms that are in the file but not in the database are stored. The following data are associated with each term insert/update:
Lukas Mueller <lam87@cornell.edu>
Naama Menda <nm249@cornell.edu>
Version 0.15, September 2010.
2018-09-27 | perl v5.26.2 |