reorient [options] new-orientation infile outfile
Convert between image orientations, i.e., physically re-order
pixel array and adapt stored anatomical orientation information
- --help
- Write list of basic command line options to standard output.
- --help-all
- Write complete list of basic and advanced command line options to standard
output.
- --wiki
- Write list of command line options to standard output in MediaWiki
markup.
- --man
- Write man page source in 'nroff' markup to standard output.
- --version
- Write toolkit version to standard output.
- --echo
- Write the current command line to standard output.
- --verbose-level
<integer>
- Set verbosity level.
- --verbose,
-v
- Increment verbosity level by 1 (deprecated; supported for backward
compatibility).
- --threads
<integer>
- Set maximum number of parallel threads (for POSIX threads and
OpenMP).
- --input-orientation
<string>, -i <string>
- Override input orientation. This is a three-letter code, e.g., 'RAS',
'LPI', etc. [Default: NONE]
- --output-orientation
<string>, -o <string>
- Override output orientation. Default is 'RAS', or the closest match
supported by the output image file format [Default: NONE]
- --output-space
<string>
- Override output coordinate space (e.g., 'RAS', 'LAS', 'LPS'). This does
not affect the array order. Default is to write image in the input image
space. [Default: NONE]
Torsten Rohlfing, with contributions from Michael P. Hasak, Greg
Jefferis, Calvin R. Maurer, Daniel B. Russakoff, and Yaroslav Halchenko
http://www.fsf.org/licensing/licenses/gpl.html
Report bugs at http://nitrc.org/projects/cmtk/
CMTK is developed with support from the NIAAA under Grant
AA021697, National Consortium on Alcohol and Neurodevelopment in Adolescence
(N-CANDA): Data Integration Component. From April 2009 through September
2011, CMTK development and maintenance was supported by the NIBIB under
Grant EB008381.