DOKK / manpages / debian 10 / cnvkit / cnvkit-access.1.en
CNVKIT_ACCESS(1) User Commands CNVKIT_ACCESS(1)

cnvkit_access - List the locations of accessible sequence regions in a FASTA file.

usage: cnvkit access [-h] [-s MIN_GAP_SIZE] [-x EXCLUDE] [-o FILENAME]

fa_fname

Genome FASTA file name

show this help message and exit
Minimum gap size between accessible sequence regions. Regions separated by less than this distance will be joined together. [Default: 5000]
Additional regions to exclude, in BED format. Can be used multiple times.
Output file name
March 2019 cnvkit_access 0.9.5