DOKK / manpages / debian 10 / cnvkit / cnvkit-breaks.1.en
CNVKIT_BREAKS(1) User Commands CNVKIT_BREAKS(1)

cnvkit_breaks - List the targeted genes in which a copy number breakpoint occurs.

usage: cnvkit breaks [-h] [-m MIN_PROBES] [-o FILENAME] filename segment

Processed sample coverage data file (*.cnr), the output of the 'fix' sub-command.
Segmentation calls (.cns), the output of the 'segment' command).

show this help message and exit
Minimum number of within-gene probes on both sides of a breakpoint to report it. [Default: 1]
Output table file name.
March 2019 cnvkit_breaks 0.9.5