DOKK / manpages / debian 10 / cnvkit / cnvkit-import-picard.1.en
CNVKIT_IMPORT-PICARD(1) User Commands CNVKIT_IMPORT-PICARD(1)

cnvkit_import-picard - Convert Picard CalculateHsMetrics tabular output to CNVkit .cnn files.


The input file is generated by the PER_TARGET_COVERAGE option in the
CalculateHsMetrics script in Picard tools.


If 'antitarget' is in the input filename, the generated output filename will
have the suffix '.antitargetcoverage.cnn', otherwise '.targetcoverage.cnn'.

usage: cnvkit import-picard [-h] [-d DIRECTORY] targets [targets ...]

Sample coverage .csv files (target and antitarget).

show this help message and exit
Output directory name.
March 2019 cnvkit_import-picard 0.9.5