DOKK / manpages / debian 10 / cnvkit / cnvkit-import-theta.1.en
CNVKIT_IMPORT-THETA(1) User Commands CNVKIT_IMPORT-THETA(1)

cnvkit_import-theta - Convert THetA output to a BED-like, CNVkit-like tabular format.


Equivalently, use the THetA results file to convert CNVkit .cns segments to
integer copy number calls.

usage: cnvkit import-theta [-h] [--ploidy PLOIDY] [-d DIRECTORY]

tumor_cns theta_results

tumor_cns theta_results

show this help message and exit
Ploidy of normal cells. [Default: 2]
Output directory name.
March 2019 cnvkit_import-theta 0.9.5