DOKK / manpages / debian 10 / cnvkit / cnvkit-metrics.1.en

cnvkit_metrics - Compute coverage deviations and other metrics for self-evaluation.

usage: cnvkit metrics [-h] [-s SEGMENTS [SEGMENTS ...]] [--drop-low-coverage]

cnarrays [cnarrays ...]

One or more bin-level coverage data files (*.cnn, *.cnr).

show this help message and exit
One or more segmentation data files (*.cns, output of the 'segment' command). If more than one file is given, the number must match the coverage data files, in which case the input files will be paired together in the given order. Otherwise, the same segments will be used for all coverage files.
Drop very-low-coverage bins before calculations to reduce negative "fat tail" of bin log2 values in poorquality tumor samples.
Output table file name.
March 2019 cnvkit_metrics 0.9.5