DOKK / manpages / debian 10 / deepnano / deepnano_basecall_no_metrichor.1.en
DEEPNANO_BASECALL_NO_METRICHOR(1) User Commands DEEPNANO_BASECALL_NO_METRICHOR(1)

deepnano_basecall_no_metrichor - basecaller for Oxford Nanopore MinION reads based on deep recurrent neural networks

usage: deepnano_basecall_no_metrichor [ARGS] [reads [reads ...]]

reads

show this help message and exit
path to network which basecalls template (has reasonable default)
path to network which basecalls complement (has reasonable default)
path to network which basecalls 2D (has reasonable default)
Max length for 2d basecall
One of: template, complement, 2d, all, use comma to separate multiple options, eg.: template,complement type of basecalling output (defaults to all)
output filename
Directory where read files are stored
Watched directory

OMP_NUM_THREADS=1 deepnano_basecall_no_metrichor <list of fast5 files>

OMP_NUM_THREADS=1 deepnano_basecall_no_metrichor --watch <directory name>

deepnano_basecall(1)

This manpage was written by Çağrı ULAŞ for the Debian distribution and can be used for any other usage of the program.

Report bugs to <https://bitbucket.org/vboza/deepnano/issues>

February 2017 deepnano_basecall_no_metrichor 0.0+20110617