domainrep - Reorder DCF file to identify representative
structures.
domainrep -dcfinfile infile
-node list
-dcfoutfile outfile
domainrep -help
domainrep is a command line program from EMBOSS
(“the European Molecular Biology Open Software Suite”). It is
part of the "Protein:3D Structure" command group(s).
-dcfinfile infile
This option specifies the name of DCF file (domain
classification file) (input). A 'domain classification file' contains
classification and other data for domains from SCOP or CATH, in DCF format
(EMBL-like). The files are generated by using SCOPPARSE and CATHPARSE. Domain
sequence information can be added to the file by using DOMAINSEQS.
-node list
This option specifies the node fore reordering the file.
Reordering can be done for any specified node in the SCOP or CATH hierarchies.
For example by selecting 'Class' entries belonging to the same Class will be
reordered in turn. Default value: 1
-dcfoutfile outfile
This option specifies the name of DCF file (domain
classification file) (output). A 'domain classification file' contains
classification and other data for domains from SCOP or CATH, in DCF format
(EMBL-like). The files are generated by using SCOPPARSE and CATHPARSE. Domain
sequence information can be added to the file by using DOMAINSEQS. Default
value: test.scop
Bugs can be reported to the Debian Bug Tracking system
(http://bugs.debian.org/emboss), or directly to the EMBOSS developers
(http://sourceforge.net/tracker/?group_id=93650&atid=605031).
domainrep is fully documented via the tfm(1) system.
Debian Med Packaging Team
<debian-med-packaging@lists.alioth.debian.org>
Wrote the script used to autogenerate this manual
page.
This manual page was autogenerated from an Ajax Control Definition
of the EMBOSS package. It can be redistributed under the same terms as
EMBOSS itself.