DOKK / manpages / debian 10 / emboss / einverted.1e.en
EINVERTED(1e) EMBOSS Manual for Debian EINVERTED(1e)

einverted - Finds inverted repeats in nucleotide sequences

einverted -sequence seqall -gap integer -threshold integer -match integer -mismatch integer [-maxrepeat integer] -outfile outfile -outseq seqout

einverted -help

einverted is a command line program from EMBOSS (“the European Molecular Biology Open Software Suite”). It is part of the "Nucleic:Repeats,Nucleic:2D structure" command group(s).

-sequence seqall

-gap integer

Default value: 12

-threshold integer

Default value: 50

-match integer

Default value: 3

-mismatch integer

Default value: -4

-maxrepeat integer

Maximum separation between the start of repeat and the end of the inverted repeat. Default value: 2000

-outfile outfile

-outseq seqout

The sequence of the inverted repeat regions without gap characters.

Bugs can be reported to the Debian Bug Tracking system (http://bugs.debian.org/emboss), or directly to the EMBOSS developers (http://sourceforge.net/tracker/?group_id=93650&atid=605031).

einverted is fully documented via the tfm(1) system.

Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>

Wrote the script used to autogenerate this manual page.

This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. It can be redistributed under the same terms as EMBOSS itself.

05/11/2012 EMBOSS 6.4.0