DOKK / manpages / debian 10 / emboss / extractalign.1e.en
EXTRACTALIGN(1e) EMBOSS Manual for Debian EXTRACTALIGN(1e)

extractalign - Extract regions from a sequence alignment

extractalign -sequence seqset -regions range -outseq seqoutall

extractalign -help

extractalign is a command line program from EMBOSS (“the European Molecular Biology Open Software Suite”). It is part of the "Alignment,Data retrieval:Sequence data,Edit" command group(s).

-sequence seqset

-regions range

Regions to extract. A set of regions is specified by a set of pairs of positions. The positions are integers. They are separated by any non-digit, non-alpha character. Examples of region specifications are: 24-45, 56-78 1:45, 67=99;765..888 1,5,8,10,23,45,57,99 Default value: $(sequence.begin)-$(sequence.end)

-outseq seqoutall

Bugs can be reported to the Debian Bug Tracking system (http://bugs.debian.org/emboss), or directly to the EMBOSS developers (http://sourceforge.net/tracker/?group_id=93650&atid=605031).

extractalign is fully documented via the tfm(1) system.

Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>

Wrote the script used to autogenerate this manual page.

This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. It can be redistributed under the same terms as EMBOSS itself.

05/11/2012 EMBOSS 6.4.0