DOKK / manpages / debian 10 / emboss / patmatmotifs.1e.en
PATMATMOTIFS(1e) EMBOSS Manual for Debian PATMATMOTIFS(1e)

patmatmotifs - Scan a protein sequence with motifs from the PROSITE database

patmatmotifs -sequence sequence [-full boolean] [-prune boolean] -outfile report

patmatmotifs -help

patmatmotifs is a command line program from EMBOSS (“the European Molecular Biology Open Software Suite”). It is part of the "Protein:Motifs" command group(s).

-sequence sequence

-full boolean

Default value: N

-prune boolean

Ignore simple patterns. If this is true then these simple post-translational modification sites are not reported: myristyl, asn_glycosylation, camp_phospho_site, pkc_phospho_site, ck2_phospho_site, and tyr_phospho_site. Default value: Y

-outfile report

Bugs can be reported to the Debian Bug Tracking system (http://bugs.debian.org/emboss), or directly to the EMBOSS developers (http://sourceforge.net/tracker/?group_id=93650&atid=605031).

patmatmotifs is fully documented via the tfm(1) system.

Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>

Wrote the script used to autogenerate this manual page.

This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. It can be redistributed under the same terms as EMBOSS itself.

05/11/2012 EMBOSS 6.4.0