DOKK / manpages / debian 10 / emboss / polydot.1e.en
POLYDOT(1e) EMBOSS Manual for Debian POLYDOT(1e)

polydot - Draw dotplots for all-against-all comparison of a sequence set

polydot -sequences seqset -wordsize integer -gap integer [-boxit boolean] [-dumpfeat toggle] -outfeat featout -graph graph

polydot -help

polydot is a command line program from EMBOSS (“the European Molecular Biology Open Software Suite”). It is part of the "Alignment:Dot plots" command group(s).

-sequences seqset

File containing a sequence alignment

-wordsize integer

Default value: 6

-gap integer

This specifies the size of the gap that is used to separate the individual dotplots in the display. The size is measured in residues, as displayed in the output. Default value: 10

-boxit boolean

Default value: Y

-dumpfeat toggle

Default value: N

-outfeat featout

-graph graph

Bugs can be reported to the Debian Bug Tracking system (http://bugs.debian.org/emboss), or directly to the EMBOSS developers (http://sourceforge.net/tracker/?group_id=93650&atid=605031).

polydot is fully documented via the tfm(1) system.

Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>

Wrote the script used to autogenerate this manual page.

This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. It can be redistributed under the same terms as EMBOSS itself.

05/11/2012 EMBOSS 6.4.0