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PRIMA(1e) EMBOSS Manual for Debian PRIMA(1e)

prima - Selects primers for PCR and DNA amplification.

prima -sequence sequence -targetrange toggle -targetstart integer -targetend integer -mintmprimer float -maxtmprimer float -minplen integer -maxplen integer -minpgccont float -maxpgccont float [-primer toggle] -minprimerlen integer -maxprimerlen integer -minpmgccont float -maxpmgccont float -overlap integer -saltconc float -dnaconc float -list boolean -outfile outfile

prima -help

prima is a command line program from EMBOSS (“the European Molecular Biology Open Software Suite”). It is part of the "Nucleic:Primers" command group(s).

-sequence sequence

-targetrange toggle

Default value: N

-targetstart integer

Default value: $(sequence.begin)

-targetend integer

Default value: $(sequence.length)

-mintmprimer float

Default value: 53

-maxtmprimer float

Default value: 58

-minplen integer

Default value: 100

-maxplen integer

Default value: 300

-minpgccont float

Default value: .40

-maxpgccont float

Default value: .55

-primer toggle

Specify primer properties Default value: Y

-minprimerlen integer

Default value: 18

-maxprimerlen integer

Default value: 22

-minpmgccont float

Default value: .40

-maxpmgccont float

Default value: .55

-overlap integer

Default value: 50

-saltconc float

Default value: 50

-dnaconc float

Default value: 50

-list boolean

Default value: N

-outfile outfile

Bugs can be reported to the Debian Bug Tracking system (http://bugs.debian.org/emboss), or directly to the EMBOSS developers (http://sourceforge.net/tracker/?group_id=93650&atid=605031).

prima is fully documented via the tfm(1) system.

Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>

Wrote the script used to autogenerate this manual page.

This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. It can be redistributed under the same terms as EMBOSS itself.

05/11/2012 EMBOSS 6.4.0