DOKK / manpages / debian 10 / fastaq / fastaq-deinterleave.1.en
FASTAQ-DEINTERLEAVE(1) User Commands FASTAQ-DEINTERLEAVE(1)

fastaq_deinterleave - Splits interleaved paired file into two separate files

usage: fastaq_deinterleave [options] <infile> <out_fwd> <out_rev>

Deinterleaves sequence file, so that reads are written alternately between two output files

Name of fasta/q file to be deinterleaved
Name of output fasta/q file of forwards reads
Name of output fasta/q file of reverse reads

show this help message and exit
Use this to write output as fasta (default is same as input)
July 2018 fastaq 3.17.0