NAME

fastx_renamer - FASTA/Q Renamer

DESCRIPTION

usage: fastx_renamer [-n TYPE] [-h] [-z] [-v] [-i INFILE] [-o OUTFILE] Part of FASTX Toolkit 0.0.14 by A. Gordon (assafgordon@gmail.com)

[-n TYPE]

= rename type:

SEQ - use the nucleotides sequence as the name. COUNT - use simply counter as the name.

[-h]

= This helpful help screen.

[-z]

= Compress output with GZIP.

[-i INFILE]

= FASTA/Q input file. default is STDIN.

[-o OUTFILE] = FASTA/Q output file. default is STDOUT.

SEE ALSO

The quality of this automatically generated manpage might be insufficient. It is suggested to visit

http://hannonlab.cshl.edu/fastx_toolkit/commandline.html

to get a better layout as well as an overview about connected FASTX tools.