NAME

fastx_trimmer - FASTA/Q Trimmer

DESCRIPTION

usage: fastx_trimmer [-h] [-f N] [-l N] [-t N] [-m MINLEN] [-z] [-v] [-i INFILE] [-o OUTFILE] Part of FASTX Toolkit 0.0.14 by A. Gordon (assafgordon@gmail.com)

[-h]

= This helpful help screen.

[-f N]

= First base to keep. Default is 1 (=first base).

[-l N]

= Last base to keep. Default is entire read.

[-t N]

= Trim N nucleotides from the end of the read.

'-t'

can not be used with '-l' and '-f'.

[-m MINLEN]

= With [-t], discard reads shorter than MINLEN.

[-z]

= Compress output with GZIP.

[-i INFILE]

= FASTA/Q input file. default is STDIN.

[-o OUTFILE] = FASTA/Q output file. default is STDOUT.

SEE ALSO

The quality of this automatically generated manpage might be insufficient. It is suggested to visit

http://hannonlab.cshl.edu/fastx_toolkit/commandline.html

to get a better layout as well as an overview about connected FASTX tools.