DOKK / manpages / debian 10 / genometools / gt-congruence-spacedseed.1.en
GT-CONGRUENCE-SPAC(1) GenomeTools Manual GT-CONGRUENCE-SPAC(1)

gt-congruence-spacedseed - Match spaced seeds.

gt congruence spacedseed [options]

-esa [string]

Specify index (enhanced suffix array) (default: undefined)

-pck [string]

Specify index (packed index) (default: undefined)

-q

Specify files containing the query sequences

-v [yes|no]

be verbose (default: no)

-help

display help and exit

-version

display version information and exit

Report bugs to <kurtz@zbh.uni-hamburg.de>.

10/28/2018 GenomeTools 1.5.10