hilive - Realtime Alignment of Illumina Reads
hilive [options] BC_DIR INDEX CYCLES
HiLive v0.1 - Realtime Alignment of Illumina Reads Copyright
© 2015, Martin S. Lindner HiLive is open-source software. Check with
--license for details.
Fixed k-mer size: 15
- BC_DIR
- Illumina BaseCalls directory of the sequencing run to analyze
- INDEX
- Path to k-mer index file (*.kix)
- CYCLES
- Total number of cycles for read 1
- --block-size
arg
- Block size for the alignment input/output stream in Bytes. Use -K
or -M to specify in Kilobytes or Megabytes
- -K
- Interpret the block-size argument as Kilobytes instead of Bytes
- -M
- Interpret the block-size argument as Megabytes instead of Bytes
- -c [ --compression ]
arg (=2)
- Compress alignment files. 0: no compression (default) 1: Deflate (smaller)
2: LZ4 (faster)
- -n [ --num-threads ]
arg (=1)
- Number of threads to spawn
This manpage was written by Andreas Tille for the Debian
distribution and can be used for any other usage of the program.