DOKK / manpages / debian 10 / iva / iva_qc_make_db.1.en
IVA_QC_MAKE_DB(1) User Commands IVA_QC_MAKE_DB(1)

iva_qc_make_db - make a database as input for iva_qc

usage: iva_qc_make_db [options] <output directory>

Name of output directory

show this help message and exit
Filename of Genbank IDs or GI numbers to be added to database. Format is: whitespace separated list of GI numbers on each line. One line defines one genome (e.g. flu is 8 segments, so put 8 GI numbers on one line for one flu reference)
Do not run kraken-build --download-library viruses when building the database. If this option used, then --add_to_ref must also be used
Number of threads to use [1]
Number to pass to kraken-build minimizer_len option [13]
Number to pass to kraken-build max_db_size option [3]
Be verbose
show program's version number and exit
August 2018 iva_qc_make_db 1.0.8