MLAGAN(1) | User Commands | MLAGAN(1) |
mlagan - highly parametrizable pairwise global aligner
mlagan seqfile_1 seqfile_2 [... seqfile_63] [-parameters]
Lagan takes local alignments generated by CHAOS as anchors, and limits the search area of the Needleman-Wunsch algorithm around these anchors.
Multi-LAGAN is a generalization of the pairwise algorithm to multiple sequence alignment. M-LAGAN performs progressive pairwise alignments, guided by a user-specified phylogenetic tree. Alignments are aligned to other alignments using the sum-of-pairs metric.
-nested : runs improvement in a nested fashion
The LAGAN_DIR variable specifies the location of the nucmatrix file. It defaults to /usr/lib/lagan, where Debian also place that file.
September 2018 | mlagan |