| Bio::AlignIO::nexml(3pm) | User Contributed Perl Documentation | Bio::AlignIO::nexml(3pm) |
Bio::AlignIO::nexml - NeXML format sequence alignment input/output stream driver
Do not use this module directly. Use it via the Bio::AlignIO class.
This object can transform Bio::SimpleAlign objects to and from NeXML format. For more information on NeXML, visit <http://www.nexml.org>.
Please direct usage questions or support issues to the mailing list:
bioperl-l@bioperl.org
rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address it. Please include a thorough description of the problem with code and data examples if at all possible.
Report bugs to the Bioperl bug tracking system to help us keep track the bugs and their resolution. Bug reports can be submitted via the web:
https://github.com/bioperl/bioperl-live/issues
Chase Miller
Mark Jensen, maj@fortinbras.us Rutger Vos, rutgeraldo@gmail.com
The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _
Title : next_aln
Usage : $aln = $stream->next_aln
Function: returns the next alignment in the stream.
Returns : Bio::Align::AlignI object - returns 0 on end of file
or on error
Args :
See Bio::Align::AlignI
Title : rewind Usage : $alnio->rewind Function: Resets the stream Returns : none Args : none
Title : doc Usage : $treeio->doc Function: Returns the biophylo nexml document object Returns : Bio::Phylo::Project Args : none or Bio::Phylo::Project object
Title : write_aln Usage : $stream->write_aln(@aln) Function: writes the $aln object into the stream in nexml format Returns : 1 for success and 0 for error Args : L<Bio::Align::AlignI> object
See Bio::Align::AlignI
| 2018-10-27 | perl v5.26.2 |