| Bio::MapIO(3pm) | User Contributed Perl Documentation | Bio::MapIO(3pm) |
Bio::MapIO - A Map Factory object
use Bio::MapIO;
my $mapio = Bio::MapIO->new(-format => "mapmaker",
-file => "mapfile.map");
while( my $map = $mapio->next_map ) {
# get each map
foreach my $marker ( $map->each_element ) {
# loop through the markers associated with the map
}
}
This is the Factory object for reading Maps from a data stream or file.
User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the Bioperl mailing list. Your participation is much appreciated.
bioperl-l@bioperl.org - General discussion http://bioperl.org/wiki/Mailing_lists - About the mailing lists
Please direct usage questions or support issues to the mailing list:
bioperl-l@bioperl.org
rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address it. Please include a thorough description of the problem with code and data examples if at all possible.
Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted the web:
https://github.com/bioperl/bioperl-live/issues
Email jason@bioperl.org
The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _
Title : new Usage : my $obj = Bio::MapIO->new(); Function: Builds a new Bio::MapIO object Returns : Bio::MapIO Args :
Title : format Usage : $format = $stream->format() Function: Get the map format Returns : map format Args : none
Title : next_tree Usage : my $map = $factory->next_map; Function: Get a map from the factory Returns : L<Bio::Map::MapI> Args : none
Title : write_tree Usage : $factory->write_map($map); Function: Write a map out through the factory Returns : none Args : L<Bio::Map::MapI>
Title : attach_EventHandler Usage : $parser->attatch_EventHandler($handler) Function: Adds an event handler to listen for events Returns : none Args : L<Bio::Event::EventHandlerI>
Title : _eventHandler Usage : private Function: Get the EventHandler Returns : L<Bio::Event::EventHandlerI> Args : none
Title : _load_format_module Usage : *INTERNAL MapIO stuff* Function: Loads up (like use) a module at run time on demand Example : Returns : Args :
Title : _guess_format Usage : $obj->_guess_format($filename) Function: Example : Returns : guessed format of filename (lower case) Args :
| 2018-10-27 | perl v5.26.2 |