| Bio::MapIO::mapmaker(3pm) | User Contributed Perl Documentation | Bio::MapIO::mapmaker(3pm) |
Bio::MapIO::mapmaker - A Mapmaker Map reader
# do not use this object directly it is accessed through the Bio::MapIO system
use Bio::MapIO;
my $mapio = Bio::MapIO->new(-format => "mapmaker",
-file => "mapfile.map");
while ( my $map = $mapio->next_map ) { # get each map
foreach my $marker ( $map->each_element ) {
# loop through the markers associated with the map
}
}
This object contains code for parsing and processing Mapmaker output and creating Bio::Map::MapI objects from it.
User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the Bioperl mailing list. Your participation is much appreciated.
bioperl-l@bioperl.org - General discussion http://bioperl.org/wiki/Mailing_lists - About the mailing lists
Please direct usage questions or support issues to the mailing list:
bioperl-l@bioperl.org
rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address it. Please include a thorough description of the problem with code and data examples if at all possible.
Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the web:
https://github.com/bioperl/bioperl-live/issues
Email jason@bioperl.org
The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _
Title : next_map Usage : my $map = $factory->next_map; Function: Get one or more map objects from the Mapmaker input Returns : Bio::Map::MapI Args : none
See Bio::Map::MapI
Title : write_map Usage : $factory->write_map($map); Function: Write a map out through the factory Returns : none Args : Bio::Map::MapI
| 2018-10-27 | perl v5.26.2 |