DOKK / manpages / debian 10 / libbio-perl-perl / Bio::PopGen::GenotypeI.3pm.en
Bio::PopGen::GenotypeI(3pm) User Contributed Perl Documentation Bio::PopGen::GenotypeI(3pm)

Bio::PopGen::GenotypeI - A marker and alleles for a specific individual

Give standard usage here

Describe the interface here

User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the Bioperl mailing list. Your participation is much appreciated.

  bioperl-l@bioperl.org                  - General discussion
  http://bioperl.org/wiki/Mailing_lists  - About the mailing lists

Please direct usage questions or support issues to the mailing list:

bioperl-l@bioperl.org

rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address it. Please include a thorough description of the problem with code and data examples if at all possible.

Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via email or the web:

  https://github.com/bioperl/bioperl-live/issues

Email jason-at-bioperl.org

The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _

 Title   : marker_name
 Usage   : my $name = $genotype->marker_name();
 Function: Get the marker name for a genotype result
 Returns : string
 Args    : none

 Title   : individual_id
 Usage   : my $indid = $genotype->individual_id();
 Function: Gets the individual id associated with a genotype
           This is effectively a back reference since we will typically
           associate a genotype with an individual with an 
           individual HAS-A genotype relationship.
 Returns : unique id string for an individual
 Args    : none

 Title   : annotation
 Usage   : my $annotation_collection = $genotype->annotation;
 Function: Get/set a Bio::AnnotationCollectionI for this genotype
 Returns : Bio::AnnotationCollectionI object
 Args    : [optional set] Bio::AnnotationCollectionI object

 Title   : get_Alleles
 Usage   : my @alleles = $genotype->get_Alleles();
 Function: Get the alleles for a given marker and individual
 Returns : array of alleles (strings in many implementations)
 Args    : none
2018-10-27 perl v5.26.2