| Bio::Restriction::Enzyme::MultiCut(3pm) | User Contributed Perl Documentation | Bio::Restriction::Enzyme::MultiCut(3pm) |
Bio::Restriction::Enzyme::MultiCut - A single restriction endonuclease
# set up a single restriction enzyme. This contains lots of # information about the enzyme that is generally parsed from a # rebase file and can then be read back use Bio::Restriction::Enzyme;
This module defines a restriction endonuclease class where one object represents one of the distinct recognition sites for that enzyme. The method others stores references to other objects with alternative sites.
In this schema each object within an EnzymeCollection can be checked for matching a sequence.
REBASE report notation "Bsp24I (8/13)GACNNNNNNTGG(12/7)" means:
Bsp24I
5' ^NNNNNNNNGACNNNNNNTGGNNNNNNNNNNNN^ 3'
3' ^NNNNNNNNNNNNNCTGNNNNNNACCNNNNNNN^ 5'
User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to one of the Bioperl mailing lists. Your participation is much appreciated.
bioperl-l@bioperl.org - General discussion http://bioperl.org/wiki/Mailing_lists - About the mailing lists
Please direct usage questions or support issues to the mailing list:
bioperl-l@bioperl.org
rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address it. Please include a thorough description of the problem with code and data examples if at all possible.
Report bugs to the Bioperl bug tracking system to help us keep track the bugs and their resolution. Bug reports can be submitted via the web:
https://github.com/bioperl/bioperl-live/issues
Heikki Lehvaslaiho, heikki-at-bioperl-dot-org
Rob Edwards, redwards@utmem.edu
Copyright (c) 2003 Rob Edwards.
Some of this work is Copyright (c) 1997-2002 Steve A. Chervitz. All Rights Reserved. This module is free software; you can redistribute it and/or modify it under the same terms as Perl itself.
Bio::Restriction::Enzyme, Bio::Restriction::Analysis, Bio::Restriction::EnzymeCollection
Methods beginning with a leading underscore are considered private and are intended for internal use by this module. They are not considered part of the public interface and are described here for documentation purposes only.
Title : new Function Function : Initializes the enzyme object Returns : The Restriction::Enzyme::MultiCut object Argument :
Title : others Usage : $re->others(@enz_obj_array); Function : Stores auxiliary Enzyme::MultiCut objects for multicutting enzymes Arguments : optional array of Enzyme::MultiCut objects Returns : array of Enzyme objects
Added for compatibility to REBASE
Title : purge_others Usage : $re->purge_references(); Function : Purges the set of references for this enzyme Arguments : Returns :
| 2018-10-27 | perl v5.26.2 |