DOKK / manpages / debian 10 / libbio-perl-perl / Bio::Search::Result::hmmer3Result.3pm.en
Bio::Search::Result::hmmer3Result(3pm) User Contributed Perl Documentation Bio::Search::Result::hmmer3Result(3pm)

Bio::Search::Result::hmmer3Result - DESCRIPTION of Object

Give standard usage here

Describe the object here

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The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _

 Title   : new
 Usage   : my $obj = new Bio::Search::Result::hmmer3Result.pm();
 Function: Builds a new Bio::Search::Result::hmmer3Result.pm object 
 Returns : an instance of Bio::Search::Result::hmmer3Result.pm
 Args    : -hmm_name => string, name of hmm file
           -sequence_file => name of the sequence file

 Title   : hmm_name
 Usage   : $obj->hmm_name($newval)
 Function: Get/Set the value of hmm_name
 Returns : value of hmm_name
 Args    : newvalue (optional)

 Title   : sequence_file
 Usage   : $obj->sequence_file($newval)
 Function: Get/Set the value of sequence_file
 Returns : value of sequence_file
 Args    : newvalue (optional)

 Title   : next_model
 Usage   : my $domain = $result->next_model
 Function: Returns the next domain - this
           is an alias for next_hit
 Returns : L<Bio::Search::Hit::HitI> object
 Args    : none

 Title   : models
 Usage   : my @domains = $result->models;
 Function: Returns the list of HMM models seen - this
           is an alias for hits()
 Returns : Array of L<Bio::Search::Hit::HitI> objects
 Args    : none

 Title   : rewind
 Usage   : $result->rewind;
 Function: Allow one to reset the Hit iteration to the beginning
           Since this is an in-memory implementation
 Returns : none
 Args    : none
2018-10-27 perl v5.26.2