| Bio::Seq::SeqFactory(3pm) | User Contributed Perl Documentation | Bio::Seq::SeqFactory(3pm) |
Bio::Seq::SeqFactory - Instantiation of generic Bio::PrimarySeqI (or derived) objects through a factory
use Bio::Seq::SeqFactory;
my $factory = Bio::Seq::SeqFactory->new();
my $primaryseq = $factory->create( -seq => 'WYRAVLC',
-id => 'name' );
# Create Bio::Seq instead of Bio::PrimarySeq objects:
my $factory = Bio::Seq::SeqFactory->new( -type => 'Bio::Seq' );
This object will build Bio::PrimarySeqI and Bio::SeqI objects generically.
User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the Bioperl mailing list. Your participation is much appreciated.
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Please direct usage questions or support issues to the mailing list:
bioperl-l@bioperl.org
rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address it. Please include a thorough description of the problem with code and data examples if at all possible.
Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the web:
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Email jason@bioperl.org
The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _
Title : new
Usage : my $obj = Bio::Seq::SeqFactory->new();
Function: Builds a new Bio::Seq::SeqFactory object
Returns : Bio::Seq::SeqFactory
Args : -type => string, name of a PrimarySeqI derived class
This is optional. Default=Bio::PrimarySeq.
Title : create
Usage : my $seq = $seqbuilder->create(-seq => 'CAGT', -id => 'name');
Function: Instantiates new Bio::SeqI (or one of its child classes)
This object allows us to genericize the instantiation of sequence
objects.
Returns : Bio::PrimarySeq object (default)
The return type is configurable using new(-type =>"...").
Args : initialization parameters specific to the type of sequence
object we want. Typically
-seq => $str,
-display_id => $name
Title : type Usage : $obj->type($newval) Function: Returns : value of type Args : newvalue (optional)
| 2018-10-27 | perl v5.26.2 |