Bio::Structure::Model(3pm) | User Contributed Perl Documentation | Bio::Structure::Model(3pm) |
Bio::Structure::Model - Bioperl structure Object, describes a Model
#add synopsis here
This object stores a Bio::Structure::Chain
User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to one of the Bioperl mailing lists. Your participation is much appreciated.
bioperl-l@bioperl.org - General discussion http://bioperl.org/wiki/Mailing_lists - About the mailing lists
Please direct usage questions or support issues to the mailing list:
bioperl-l@bioperl.org
rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address it. Please include a thorough description of the problem with code and data examples if at all possible.
Report bugs to the Bioperl bug tracking system to help us keep track the bugs and their resolution. Bug reports can be submitted via the web:
https://github.com/bioperl/bioperl-live/issues
Email kris.boulez@algonomics.com
The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _
Title : new() Usage : $struc = Bio::Structure::Model->new( -id => 'human_id', ); Function: Returns a new Bio::Structure::Model object from basic constructors. Probably most called from Bio::Structure::IO. Returns : a new Bio::Structure::Model object
Title : chain Usage : Function: will eventually allow parent/child navigation not via an Entry object Returns : Args :
Title : add_chain Usage : Function: will eventually allow parent/child navigation not via an Entry object Returns : Args :
Title : entry Usage : Function: will eventually allow parent/child navigation not via an Entry object Returns : Args :
Title : id Usage : $model->id("model 5") Function: Gets/sets the ID for this model Returns : the ID Args : the ID
Title : residue Usage : Function: will eventually allow parent/child navigation not via an Entry object Returns : Args :
Title : add_residue Usage : Function: will eventually allow parent/child navigation not via an Entry object Returns : Args :
Title : _remove_chains Usage : Function: Removes the chains attached to a Model. Tells the chains they don't belong to this Model any more Returns : Args :
Title : _remove_entry Usage : Function: Removes the Entry this Model is atttached to. Returns : Args :
Title : _create_default_chain Usage : Function: Creates a default Chain for this Model. Typical situation in an X-ray structure where there is only one chain Returns : Args :
Title : _grandparent Usage : Function: get/set a symbolic reference to our grandparent Returns : Args :
2018-10-27 | perl v5.26.2 |