| Bio::Tools::Hmmpfam(3pm) | User Contributed Perl Documentation | Bio::Tools::Hmmpfam(3pm) |
Bio::Tools::Hmmpfam - Parser for Hmmpfam program
use Bio::Tools::Hmmpfam;
my @hmmpfam_feat;
my $hmmpfam_parser = Bio::Tools::Hmmpfam->new(-fh =>$filehandle );
while( my $hmmpfam_feat = $hmmpfam_parser->next_result ) {
push @hmmpfam_feat, $hmmpfam_feat;
}
Parser for Hmmpfam program. See also Bio::SearchIO::hmmer.
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The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _
Title : new
Usage : my $obj = Bio::Tools::Hmmpfam->new(-fh=>$filehandle);
Function: Builds a new Bio::Tools::Hmmpfam object
Returns : Bio::Tools::Hmmpfam
Args : -filename
-fh (filehandle)
Title : next_result Usage : my $feat = $hmmpfam_parser->next_result Function: Get the next result set from parser data Returns : L<Bio::SeqFeature::Generic> Args : none
Title : create_feature Usage : my $feat=$hmmpfam_parser->create_feature($feature,$seqname) Function: creates a SeqFeature Generic object Returns : L<Bio::SeqFeature::Generic> Args :
Title : seqname Usage : obj->seqname($seqname) Function: Internal(not to be used directly) Returns : Args : seqname
| 2018-10-27 | perl v5.26.2 |