| Bio::Tools::Phylo::Phylip::ProtDist(3pm) | User Contributed Perl Documentation | Bio::Tools::Phylo::Phylip::ProtDist(3pm) |
Bio::Tools::Phylo::Phylip::ProtDist - parser for ProtDist output
use Bio::Tools::Phylo::Phylip::ProtDist;
my $parser = Bio::Tools::Phylo::Phylip::ProtDist->new(-file => 'outfile');
while( my $result = $parser->next_matrix) {
# do something with it
}
A parser for ProtDist output into a Bio::Matrix::PhylipDist object. See also Bio::Matrix::IO::phylip this module may go away.
User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the Bioperl mailing list. Your participation is much appreciated.
bioperl-l@bioperl.org - General discussion http://bioperl.org/wiki/Mailing_lists - About the mailing lists
Please direct usage questions or support issues to the mailing list:
bioperl-l@bioperl.org
rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address it. Please include a thorough description of the problem with code and data examples if at all possible.
Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the web:
https://github.com/bioperl/bioperl-live/issues
Email shawnh@fugu-sg.org
The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _
Title : new
Usage : my $obj = Bio::Tools::Phylo::Phylip::ProtDist->new();
Function: Builds a new Bio::Tools::Phylo::Phylip::ProtDist object
Returns : Bio::Tools::ProtDist
Args : -fh/-file => $val, # for initing input, see Bio::Root::IO
-program => 'programname' # name of the program
Title : next_matrix Usage : my $matrix = $parser->next_matrix Function: Get the next result set from parser data Returns : L<Bio::Matrix::PhylipDist> Args : none
| 2018-10-27 | perl v5.26.2 |