Bio::Tools::RepeatMasker(3pm) | User Contributed Perl Documentation | Bio::Tools::RepeatMasker(3pm) |
Bio::Tools::RepeatMasker - a parser for RepeatMasker output
use Bio::Tools::RepeatMasker; my $parser = Bio::Tools::RepeatMasker->new(-file => 'seq.fa.out'); while( my $result = $parser->next_result ) { # get some value }
A parser for RepeatMasker output
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The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _
Title : new Usage : my $obj = Bio::Tools::RepeatMasker->new(); Function: Builds a new Bio::Tools::RepeatMasker object Returns : Bio::Tools::RepeatMasker Args : -fh/-file => $val, for initing input, see Bio::Root::IO
Title : next_result Usage : my $r = $rpt_masker->next_result Function: Get the next result set from parser data Returns : Bio::SeqFeature::FeaturePair Feature1 is the Query coordinates and Feature2 is the Hit Args : none
2018-10-27 | perl v5.26.2 |