| Bio::TreeIO::nexml(3pm) | User Contributed Perl Documentation | Bio::TreeIO::nexml(3pm) |
Bio::TreeIO::nexml - A TreeIO driver module for parsing NeXML tree files
use Bio::TreeIO;
my $in = Bio::TreeIO->new(-file => 'data.nexml' -format => 'Nexml');
while( my $tree = $in->next_tree ) {
}
This is a driver module for parsing tree data in a NeXML format. For more information on NeXML, visit <http://www.nexml.org>.
User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the Bioperl mailing list. Your participation is much appreciated.
bioperl-l@bioperl.org - General discussion http://bioperl.org/wiki/Mailing_lists - About the mailing lists
Please direct usage questions or support issues to the mailing list:
bioperl-l@bioperl.org
rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address it. Please include a thorough description of the problem with code and data examples if at all possible.
Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the web:
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Email chmille4@gmail.com
The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _
Title : next_tree Usage : my $tree = $treeio->next_tree Function: Gets the next tree in the stream Returns : L<Bio::Tree::TreeI> Args : none
Title : doc Usage : $treeio->doc Function: Returns the biophylo nexml document object Returns : Bio::Phylo::Project Args : none or Bio::Phylo::Project object
Title : rewind Usage : $treeio->rewind Function: Resets the stream Returns : none Args : none
Title : write_tree Usage : $treeio->write_tree($tree); Function: Writes a tree onto the stream Returns : none Args : L<Bio::Tree::TreeI>
| 2018-10-27 | perl v5.26.2 |