| Bio::TreeIO::svggraph(3pm) | User Contributed Perl Documentation | Bio::TreeIO::svggraph(3pm) |
Bio::TreeIO::svggraph - A simple output format that converts a Tree object to an SVG output
use Bio::TreeIO;
my $in = Bio::TreeIO->new(-file => 'input', -format => 'newick');
my $out = Bio::TreeIO->new(-file => '>output', -format => 'svggraph');
while( my $tree = $in->next_tree ) {
my $svg_xml = $out->write_tree($tree);
}
This outputs a tree as an SVG graphic using the SVG::Graph API
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Email brian.oconnor-at-excite.com
Allen Day Guillaume Rousse, Guillaume-dot-Rousse-at-inria-dot-fr
The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _
Title : new
Usage : my $obj = Bio::TreeIO::svggraph->new();
Function: Builds a new Bio::TreeIO::svggraph object
Returns : Bio::TreeIO::svggraph
Args :-width => image width (default 1600)
-height => image height (default 1000)
-margin => margin (default 30)
-stroke => stroke color (default 'black')
-stroke_width=> stroke width (default 2)
-font_size=> font size (default '10px')
-nomalize => undef or 'log' (default is undef)
Title : write_tree Usage : $treeio->write_tree($tree); Function: Write a tree out to data stream in newick/phylip format Returns : none Args : Bio::Tree::TreeI object
Title : _decorateRoot Usage : internal methods Function: Example : Returns : Args :
Title : next_tree Usage : Function: Sorry not possible with this format Returns : none Args : none
| 2018-10-27 | perl v5.26.2 |