maq.pl - helper script for maq
maq.pl <command> [options]
<input> [...]
helper script for maq
Version: 0.4.7
- easyrun
- simple pipeline for small dataset
- demo
- demonstration of maq functionalities (for SE only)
- SNPfilter
- filter SNPs
- statmap
- extract statistics from the error output of 'maq map'
- chrpt2snp
- convert dbSNP's chr_rpt file to .snp file
- ucsc2snp
- convert UCSC's SNP dump to .snp file
- fastq2bfq
- convert fastq in batch
- cat2pair
- convert paired end reads format
- sv
- call structural variations
- indelpe
- post-processing indelpe output
The program was written by Heng Li <lh3@sanger.ac.uk>.
This manpage was written by Andreas Tille for the Debian
distribution and can be used for any other usage of the program.