obidistribute - description of obidistribute
obidistribute distributes equitably a set of sequence
records over several files (No sequence records are printed on standard
output).
The number of files is set using the -n option (required).
File names are build with a prefix if provided (-p``option) and the file
number (1 to ``n).
Example:
> obidistribute -n 10 -p 'part' seq.fastq
Distribute the sequence records contained in the seq.fastq
file and distributes them over files part_1.fastq to
part_10.fastq.
- --skip
<N>
- The N first sequence records of the file are discarded from the analysis
and not reported to the output file
- --only
<N>
- Only the N next sequence records of the file are analyzed. The following
sequences in the file are neither analyzed, neither reported to the output
file. This option can be used conjointly with the –skip
option.
- --embl
- Input file is in embl format.
- --fasta
- Input file is in fasta format (including OBITools fasta extensions).
- --sanger
- Input file is in Sanger fastq format (standard fastq used by HiSeq/MiSeq
sequencers).
- --solexa
- Input file is in fastq format produced by Solexa (Ga IIx) sequencers.
- --ecopcr
- Input file is in ecoPCR format.
- --nuc
- Input file contains nucleic sequences.
- --prot
- Input file contains protein sequences.
- --fasta-output
- Output sequences in OBITools fasta format
- --ecopcrdb-output=<PREFIX_FILENAME>
- Creates an ecoPCR database from sequence records results
- --uppercase
- Print sequences in upper case (default is lower case)
- --DEBUG
- Sets logging in debug mode.
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