DOKK / manpages / debian 10 / pbalign / createChemistryHeader.1.en
CREATECHEMISTRYHEADER(1) User Commands CREATECHEMISTRYHEADER(1)

createChemistryHeader - Create a SAM header with PacBio sequencing chemistry information

usage: getChemistryHeader.py [-h] [--debug] --bas_files BAS_FILES

[BAS_FILES ...]
input_alignment_file output_header_file

createChemistryHeader creates a SAM header that contains the chemistry information used by Quiver.

A SAM or BAM file produced by BLASR.
Name of the SAM or BAM header file that will be created with chemistry information loaded.

show this help message and exit
Output detailed log information. (default: False)
The bas or bax files containing the reads that were aligned in the input_alignment_file. Also can be a fofn of bas or bax files. (default: None)

This manpage was written by Andreas Tille for the Debian distribution and can be used for any other usage of the program.

October 2018 createChemistryHeader 0.3.1