DOKK / manpages / debian 10 / pbalign / maskAlignedReads.py.1.en
MASKALIGNEDREADS(1) User Commands MASKALIGNEDREADS(1)

maskAlignedReads - Mask aligned reads in regions file

usage: maskAlignedReads [-h] [-v] [-l LOGFILE] [-d] [-i]

inCmpFile inRgnFofn outRgnFofn

Use in.cmp.h5 to mask corresponding regions of files in in.rgn.h5, write output to a new rgn.fofn.

An input cmp.h5 file.
A fofn of input region table files.
A fofn of output region table files.

show this help message and exit
show program's version number and exit
Specify a file to log to. Defaults to stderr. (default: None)
Increases verbosity of logging (default: False)
Display informative log entries (default: False)

This manpage was written by Andreas Tille for the Debian distribution and can be used for any other usage of the program.

October 2018 maskAlignedReads 0.3.1