NAME

pxlog - MCMC log file manipulator.

SYNOPSIS

pxlog [OPTION]...

DESCRIPTION

MCMC log file manipulator. Can combine and resample parameters or trees across files. Log files need not contain the same number of samples. Input files may be indicated using wildcards e.g. '*.trees' Parameter log files are expected to be whitespace delimited. *NOTE* All values are in terms of number of SAMPLES (NOT generations).

-p, --parmf=FILE

input parameter log file(s)

-t, --treef=FILE

input tree log file(s)

-o, --outf=FILE

output file, stout otherwise

-b, --burnin=INT

number of samples to exclude at the beginning of a file

-n, --thin=INT

interval of resampling

-r, --rand=INT

number of random samples (without replacement) not yet implemented!

-i, --info

calculate log file attributes and exit

-x, --seed=INT

random number seed, clock otherwise

-v, --verbose

make the output more verbose

-h, --help

display this help and exit

-V, --version

display version and exit

REPORTING BUGS

Report bugs to: <https://github.com/FePhyFoFum/phyx/issues> phyx home page: <https://github.com/FePhyFoFum/phyx>

AUTHOR

This manpage was written by Andreas Tille for the Debian distribution and can be used for any other usage of the program.