NAME

pxstrec - This will conduct state reconstruction analyses.

SYNOPSIS

pxstrec [OPTION]... [FILE]...

DESCRIPTION

This will conduct state reconstruction analyses.

-d, --dataf=FILE

input data file

-w, --datawide

data is in wide format so (001 instead of 2)

-z, --dataz

data is in probability format (0,1,0,0)

-t, --treef=FILE

input tree file

-c, --conf=FILE

configuration file

-o, --outanc=FILE

output file for ancestral calc

-n, --outstnum=FILE output file for stochastic mapping number

-a, --outstnumany=FILE output file for stochastic mapping number any

-m, --outsttim=FILE output file for stochastic mapping duration

-p, --periods=NUMS

comma separated times

-l, --logf=FILE

log file, stout otherwise

-h, --help

display this help and exit

-V, --version

display version and exit

REPORTING BUGS

Report bugs to: <https://github.com/FePhyFoFum/phyx/issues> phyx home page: <https://github.com/FePhyFoFum/phyx>

AUTHOR

This manpage was written by Andreas Tille for the Debian distribution and can be used for any other usage of the program.