DOKK / manpages / debian 10 / seer / mapping_to_phandango.1.en
MAPPING_TO_PHANDANGO(1) User Commands MAPPING_TO_PHANDANGO(1)

mapping_to_phandango - create a plot file for visualisation in phandango

mapping_to_phandango -s <sam_file> -k <seer_kmers> > phandango.plot

Creates a plot file for visualisation in phandango

Sam file of kmers mapped to reference (unsorted)
Kmers that were mapped

Minimum mapping quality
Displays this message

This manpage was written by Andreas Tille for the Debian distribution and can be used for any other usage of the program.

March 2017 mapping_to_phandango 1.1.2